PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019191937.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 355aa    MW: 41132 Da    PI: 4.3298
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019191937.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix476.8e-15113198286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W+++e  +L+e+  e+  +l+r++l++ +W +v++k++e  g+e+s + C++ ++ l+k+ykk++e ++k   + ss++p+f++++
  XP_019191937.1 113 WSEEESFVLLEVWGERYLELGRRSLRGEDWVDVAEKVSElIGVEKSEIDCRNQLDVLKKKYKKEREKMEKMGGGFSSKWPFFKKMD 198
                     *************************************66379****************************99*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    
MDDSDDEGRY SQKPTSVYSF SSRSRRPIRN PSSYPKDTHY SRYKNEYEYD DTEESDEGED  60
DPEFNGGAEN GYDFRNKKKR KMESLASNYE FAPRAVGNLQ GTTRGGGSSR GAWSEEESFV  120
LLEVWGERYL ELGRRSLRGE DWVDVAEKVS ELIGVEKSEI DCRNQLDVLK KKYKKEREKM  180
EKMGGGFSSK WPFFKKMDVL MNLRMKGHCG LGCGVDSGEY VFMDPRMYLD RSNVMDEMRD  240
SPAGSDVDNE DEQEEMEGDA GWEEDEESAK LLAESIQRFG DIYEKIENSK RKQMMELEKM  300
KWEFQRELEM QKKQIVERAQ AEIAKIRDTE DSGGDDDEDD EEEENNNVSA EKLNG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.15e-68Trihelix family protein