PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019191751.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 968aa MW: 107947 Da PI: 7.2687

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019191751.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.1	2.6e-09	215	273	22	81
trihelix 22 rrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 +rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e++++ e+ +y XP_019191751.1 215 GRGKTRADKDKEVAEFLNRHGVNRDAKTAGTKWDNMLGEFRKVYEWERGGEREQM-GKSY 273 5788999999**************************************9954443.4445 PP

Sequence ? help Back to Top
Protein Sequence Length: 968 aa Download sequence
MVDNKGETTK KTQHHAHLSA SSDDPADQDP AEDTPQHPPQ PVVSGASHYV SPTLYIPTGT 60 ATSGAFEQQQ QQFESVNPKR PRYAAVAAAS QWKPIPSSSS QQQQKPSMLS SESTPSPSAN 120 PQAGHAAASS SNTASSPSHS PRPSHSGQEA NKPASEMEHF PQQHHHQFRK GKYVSPVWKP 180 NEMLWLARAW RVQYHGGSSE LQGEGGEITT VTPPGRGKTR ADKDKEVAEF LNRHGVNRDA 240 KTAGTKWDNM LGEFRKVYEW ERGGEREQMG KSYFRLSPYE RKIHRLPASF DEQVFEELSQ 300 FMGPRMRTTT PQTSRGGVAL ISTGDALMPP KSLPPPHPFR EEELSLPGAR AAKQQLILAS 360 GEGIIHGGTR GVLGFEAASM EASKEVRRIG KIRMIWEESV SIWAEEGEHH RGRVKVPGSS 420 FLNADELAFL DDSMVASTLE TFEDGPLKGF SVDRFISGQH LKVFGRRKPS LPPPASNERF 480 HLHSMEPSIR SITPWEFQDP SEYYVGCLRV PPPSLPCLFE LSWYLQEPPP EELRFPLRKD 540 VYRDLPQGKE LFFTTSTELL DCRGISFDVL SSVMRSNPSL SASTSACRDS FIGLWDDCIN 600 RMVSKFCSQE MLFIRKSSSS SSLAETVQDQ WPNVTAFIRN FCLWRGEETD QLREGQLDPS 660 STLVEKIMWT YADVPYVLGY YAVGFLVTFC ALSRLQDRII RTDLYTVDLS TPSERLKALV 720 PCWRIAGVLP LLADRCLGNG NGNGYKVLPY GDFERSDLGN GNIIEMTPNS VVRYFSSRRK 780 WAAIKEIYDF LDHRIPHAEF IVRSSEKDLA LVLKPRGCRF RPANCDQLVE ALKHVTKALV 840 ALHDLSFMHR DLGWDKVMRR SDRDDGEWFI TGFDEAVGAP QINAHGAAAS GRHAPEMGRG 900 LHGVKVDVWG VGQLVKTSGL VGVPKLLREL QNRCLDHNPE QRPTAADCYH HLLQLQSSMS 960 SAASGGGY

Sequence ? help Back to Top

Protein Sequence Length: 968 aa Download sequence

MVDNKGETTK KTQHHAHLSA SSDDPADQDP AEDTPQHPPQ PVVSGASHYV SPTLYIPTGT  60
ATSGAFEQQQ QQFESVNPKR PRYAAVAAAS QWKPIPSSSS QQQQKPSMLS SESTPSPSAN  120
PQAGHAAASS SNTASSPSHS PRPSHSGQEA NKPASEMEHF PQQHHHQFRK GKYVSPVWKP  180
NEMLWLARAW RVQYHGGSSE LQGEGGEITT VTPPGRGKTR ADKDKEVAEF LNRHGVNRDA  240
KTAGTKWDNM LGEFRKVYEW ERGGEREQMG KSYFRLSPYE RKIHRLPASF DEQVFEELSQ  300
FMGPRMRTTT PQTSRGGVAL ISTGDALMPP KSLPPPHPFR EEELSLPGAR AAKQQLILAS  360
GEGIIHGGTR GVLGFEAASM EASKEVRRIG KIRMIWEESV SIWAEEGEHH RGRVKVPGSS  420
FLNADELAFL DDSMVASTLE TFEDGPLKGF SVDRFISGQH LKVFGRRKPS LPPPASNERF  480
HLHSMEPSIR SITPWEFQDP SEYYVGCLRV PPPSLPCLFE LSWYLQEPPP EELRFPLRKD  540
VYRDLPQGKE LFFTTSTELL DCRGISFDVL SSVMRSNPSL SASTSACRDS FIGLWDDCIN  600
RMVSKFCSQE MLFIRKSSSS SSLAETVQDQ WPNVTAFIRN FCLWRGEETD QLREGQLDPS  660
STLVEKIMWT YADVPYVLGY YAVGFLVTFC ALSRLQDRII RTDLYTVDLS TPSERLKALV  720
PCWRIAGVLP LLADRCLGNG NGNGYKVLPY GDFERSDLGN GNIIEMTPNS VVRYFSSRRK  780
WAAIKEIYDF LDHRIPHAEF IVRSSEKDLA LVLKPRGCRF RPANCDQLVE ALKHVTKALV  840
ALHDLSFMHR DLGWDKVMRR SDRDDGEWFI TGFDEAVGAP QINAHGAAAS GRHAPEMGRG  900
LHGVKVDVWG VGQLVKTSGL VGVPKLLREL QNRCLDHNPE QRPTAADCYH HLLQLQSSMS  960
SAASGGGY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-07	Trihelix family protein