PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019191741.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 263aa    MW: 29305.1 Da    PI: 8.3979
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019191741.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.1e-15956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +lv ++ ++G  +W+  +r+ g+ Rt+k+c++rw +yl
   XP_019191741.1  9 KGPWSPEEDRKLVSYIMRYGIWNWRQMPRYAGLERTGKSCRLRWVNYL 56
                     79******************99************************97 PP
2Myb_DNA-binding40.46.9e-1362107148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++  eE  +l+++ + lG++ W++Ia+ ++ gRt++++k++++++l
   XP_019191741.1  62 RGPFDMEEVSILIHLYQSLGNK-WSAIAAQLP-GRTDNDIKNFFHTHL 107
                      899999****************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MEPATSLKKG PWSPEEDRKL VSYIMRYGIW NWRQMPRYAG LERTGKSCRL RWVNYLRPDV  60
RRGPFDMEEV SILIHLYQSL GNKWSAIAAQ LPGRTDNDIK NFFHTHLKKL LKMNNATAGA  120
GAGAPSRPKP SIRAKRLISQ TVATNLINNT VSAAAPPPPP PESPDSWNSE IYQVSVVDVN  180
NNNNNINFSE TPQDYNSSPQ VVILESSPNS FAPPLSGEAG LHQLPYTAAP AAVTVDMKMN  240
FSSSSDVDDT AFWYDMLAEA ERL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.17e-50MYB family protein