PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_019191632.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 199aa MW: 22407.3 Da PI: 8.8169 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 222.6 | 1.1e-68 | 2 | 170 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldes..lkeelleelkveeenlksnvekeesast 94 +++ +seq+Cy+ CnfCn +lavsvP +slf +vtvrCGhC++l svn+a a q l+++s + s ++l++ ++ ++++ + ++++ s+ XP_019191632.1 2 STDVASEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCSNLWSVNMAAAFQSLSSSSSSSPShwQDHHLHQVPSYTSPEYRMDYGSSSKYSN 96 567799*********************************************99999888764333002333555555555555555555555555 PP YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + + + +++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl XP_019191632.1 97 RMGMAMRPPITNRTEE--RIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 170 5555443333333333..3599****************************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 199 aa Download sequence |
MSTDVASEQL CYIPCNFCNI VLAVSVPCSS LFDIVTVRCG HCSNLWSVNM AAAFQSLSSS 60 SSSSPSHWQD HHLHQVPSYT SPEYRMDYGS SSKYSNRMGM AMRPPITNRT EERIVNRPPE 120 KRQRVPSAYN QFIKEEIQRI KANNPDISHR EAFSTAAKNW AHFPHIHFGL MLESNNQPKI 180 GGTEGTGKHM THRAALLNK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26580.1 | 3e-83 | YABBY family protein |