PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019191481.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 299aa MW: 32805.9 Da PI: 7.8812

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019191481.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.9	4e-19	133	187	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Le+ F+ +++++ +++ LAk+l+L+ rqV vWFqNrRa+ k XP_019191481.1 133 RKKLRLSKEQAAVLEDTFRGHNTLNPKQKVALAKQLNLKPRQVEVWFQNRRARTK 187 788899***********************************************98 PP
2	HD-ZIP_I/II	125.1	3.3e-40	133	222	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+++LE++F+ +++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E d+e+L+r++++l++en+rL+kev++Lr +l XP_019191481.1 133 RKKLRLSKEQAAVLEDTFRGHNTLNPKQKVALAKQLNLKPRQVEVWFQNRRARTKLKQTEIDCEYLRRCCERLADENRRLHKEVNDLR-AL 222 69*************************************************************************************9.44 PP

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence
MGESNDDFGL SLSLGLPPPA TTNGKNVGNG FEPTAPRSFP LNLLHPRLPF MQHRNLHSSS 60 ENGGGIDINQ PVTASEYDDN AMASSPHSTA STVTGKRSER EYETAAEAEA EMATSSMEED 120 DAGDDAAAAA AARKKLRLSK EQAAVLEDTF RGHNTLNPKQ KVALAKQLNL KPRQVEVWFQ 180 NRRARTKLKQ TEIDCEYLRR CCERLADENR RLHKEVNDLR ALKLSPQLYM NMSPPTTLIM 240 CPQCQRAPLS SPPPTSSTSS SCAATMPPAA TVHRHQPAPP GLIQSWTAIL QPQPHRPQL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	190	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	2e-64	HD-ZIP family protein