PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019191342.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 474aa MW: 51095.8 Da PI: 9.6841

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019191342.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_019191342.1 63 FICEICNKGFQRDQNLQLHRRGH 85 89*******************88 PP
2	zf-C2H2	12.2	0.00055	140	162	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ XP_019191342.1 140 WKCDKCSKKYAVQSDWKAHSKTC 162 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MMSGDVFSIP SSLKPIPPPP QDPNPNPKPN PSSKKKRNLP GTPDPDAEVI ALSPKTLMAT 60 NRFICEICNK GFQRDQNLQL HRRGHNLPWK LKQRAKTEVV KRKVYICPEK TCVHHDPSRA 120 LGDLTGIKKH FSRKHGEKKW KCDKCSKKYA VQSDWKAHSK TCGTREYKCD CGTLFSRKDS 180 FITHRAFCDA LAEESARITS VAANTLNFRN NSDSLMNPQQ NLPHGGGGGG IPQFPAAFQQ 240 KPRLSLWLDQ AANANSHHHL QMPANSAGIF GAGSGSLPEI LQMGNSPMMY GSSPMESFGT 300 SNLSLSPLAP QGLQETEGMG ISKGMAETLS SMYSDSLQTS SKSSAGGPMS ATALLQKAAQ 360 MGSTKSAPTA FFGNSFGLMT SSSSSSNNRS GELQHMVFPK ESGFDSGAAA AAEHSSCLMQ 420 RQPQGVSLNG VNVNAHHLTR DFLGMGSEDG RPFLAEELAK FASSMGLSHF SSGH

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MMSGDVFSIP SSLKPIPPPP QDPNPNPKPN PSSKKKRNLP GTPDPDAEVI ALSPKTLMAT  60
NRFICEICNK GFQRDQNLQL HRRGHNLPWK LKQRAKTEVV KRKVYICPEK TCVHHDPSRA  120
LGDLTGIKKH FSRKHGEKKW KCDKCSKKYA VQSDWKAHSK TCGTREYKCD CGTLFSRKDS  180
FITHRAFCDA LAEESARITS VAANTLNFRN NSDSLMNPQQ NLPHGGGGGG IPQFPAAFQQ  240
KPRLSLWLDQ AANANSHHHL QMPANSAGIF GAGSGSLPEI LQMGNSPMMY GSSPMESFGT  300
SNLSLSPLAP QGLQETEGMG ISKGMAETLS SMYSDSLQTS SKSSAGGPMS ATALLQKAAQ  360
MGSTKSAPTA FFGNSFGLMT SSSSSSNNRS GELQHMVFPK ESGFDSGAAA AAEHSSCLMQ  420
RQPQGVSLNG VNVNAHHLTR DFLGMGSEDG RPFLAEELAK FASSMGLSHF SSGH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-108	C2H2 family protein