PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019191180.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 482aa    MW: 55461.4 Da    PI: 8.081
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019191180.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.95.1e-2170166290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                     fY++YA +vGF++rk +++ + r+g++  + + Cs+eg++ ++k +         t+ ++r+r+++r+gCka++++++ k+g++ v+ +el H+H
  XP_019191180.1  70 FYRAYAITVGFDIRKGTMRMN-REGKVHIKYMLCSREGFKPPKKGSntvndmvnpTQPKKRKRVSKRVGCKARIVITRCKTGNYTVHAVELWHTH 163
                     9****************9999.66669999999*********99999********9*************************************** PP

            FAR1  88 ela 90 
                      l+
  XP_019191180.1 164 CLC 166
                     998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    
MADEDLPNFD ANLDSMDDTN PSKEHTEEEA TDCEMIILPD GTKRWLPTCK SECTRYEGQQ  60
FATLEDGLAF YRAYAITVGF DIRKGTMRMN REGKVHIKYM LCSREGFKPP KKGSNTVNDM  120
VNPTQPKKRK RVSKRVGCKA RIVITRCKTG NYTVHAVELW HTHCLCSDIG RPFLKINRKL  180
DIGHKIFLAN YARANIGTTK SWTLYKEMVG SFNDIGATST NFCNFRRDLL AYIAGADAQM  240
VVEDMYKNKE ANPDFYFDFD LNEDRQLCRL FWADAISRKN FACFGDVMSF DATYSMNRYK  300
LVLVPFTGVD NHKRSITFGA SLIAREEVES YEWLLKSFKT AMGYTPRCTI TDQDPALKVA  360
IPNIMPETRH RFCMWHIMSK VGDKAGPALA KNVEFKKALN NAIWDETLSA TEFELKWAKV  420
MQDYNLVEHR WFNQLYEAHA SWIPAYFQDI LMGGLLKTTS RSESENSYFG KFTNHHCSLV  480
EL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-64FAR1 family protein