PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019191049.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 708aa MW: 79461.6 Da PI: 8.9165

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019191049.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.1	9e-21	70	168	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY++Y++ GF++r ++ k+ r+g +++r +vCs++g + ++ ++k+rr+r+++r+gC+akl +kk+++g+++vtk++++H XP_019191049.1 70 EFYKNYGRVGGFDIRHNSVKRD-RTGAVIRRSLVCSRQGAKGGGRRVptvvvnvtssSNKQRRRRVSNRIGCNAKLGLKKNSTGEFVVTKFVEDH 163 6*************999887.8888*********999888799***9999******************************* PP FAR1 86 nHela 90 +H+l+ XP_019191049.1 164 THSLC 168 **8 PP

Sequence ? help Back to Top
Protein Sequence Length: 708 aa Download sequence
MEIHGDATPT TGAAEHYPTG SIDGDSSTRD VTHYTPGPTT GLKQHWKPTV DTKIIPVLGQ 60 RFKSLSEGIE FYKNYGRVGG FDIRHNSVKR DRTGAVIRRS LVCSRQGAKG GGRRVPTVVV 120 NVTSSSNKQR RRRVSNRIGC NAKLGLKKNS TGEFVVTKFV EDHTHSLCSE GAKLFMRGNR 180 KLNVAQQAFL ANCFKANVGA STGMRLCREV AGSFENVGAT YVEFHNFKRD LQAYVDEVDG 240 ELIIERYNLV FVPFTGVDNH KRCITLAAGL LNKEDVESYS WLLERFIHAM GNVPLCVVTD 300 QDPAMKIAIR QVLPGCRHRY CMWHIMTKVG EKFGPELSNN EVFRKSLNDI VWNETTSTGD 360 FEVQWQLLME KYNLSDHRWF QSLYADRDHW IPAFFIDSPL SGLVRTTSRS EAQNNVYGKF 420 TRLHSSLVEF YMQFESVLET QRHNQAKLDA QCEGSLPDFK TPLALERHAA DLFTLSIFYT 480 LQEEIEAAFF YCEIVGIRED GGNIYYTIKG DGTTTYTVKH EPGGSSTICS CKMFQRLGLI 540 CRHMFMVFKG SHLQQLPSQY VVDRWRKHLG CNACRGQHVD GVPPKSGATE LWSEINTCVG 600 MVGESTVRQA RMVQVLKELR DEFASDCEII GAAKSNRATI EAFCGVQPPP CITIKPPAQA 660 KNKGSGKRIK SNREIAIENS VKVGRKCGVC GEYARHNARS CPSKQRVV

Sequence ? help Back to Top

Protein Sequence Length: 708 aa Download sequence

MEIHGDATPT TGAAEHYPTG SIDGDSSTRD VTHYTPGPTT GLKQHWKPTV DTKIIPVLGQ  60
RFKSLSEGIE FYKNYGRVGG FDIRHNSVKR DRTGAVIRRS LVCSRQGAKG GGRRVPTVVV  120
NVTSSSNKQR RRRVSNRIGC NAKLGLKKNS TGEFVVTKFV EDHTHSLCSE GAKLFMRGNR  180
KLNVAQQAFL ANCFKANVGA STGMRLCREV AGSFENVGAT YVEFHNFKRD LQAYVDEVDG  240
ELIIERYNLV FVPFTGVDNH KRCITLAAGL LNKEDVESYS WLLERFIHAM GNVPLCVVTD  300
QDPAMKIAIR QVLPGCRHRY CMWHIMTKVG EKFGPELSNN EVFRKSLNDI VWNETTSTGD  360
FEVQWQLLME KYNLSDHRWF QSLYADRDHW IPAFFIDSPL SGLVRTTSRS EAQNNVYGKF  420
TRLHSSLVEF YMQFESVLET QRHNQAKLDA QCEGSLPDFK TPLALERHAA DLFTLSIFYT  480
LQEEIEAAFF YCEIVGIRED GGNIYYTIKG DGTTTYTVKH EPGGSSTICS CKMFQRLGLI  540
CRHMFMVFKG SHLQQLPSQY VVDRWRKHLG CNACRGQHVD GVPPKSGATE LWSEINTCVG  600
MVGESTVRQA RMVQVLKELR DEFASDCEII GAAKSNRATI EAFCGVQPPP CITIKPPAQA  660
KNKGSGKRIK SNREIAIENS VKVGRKCGVC GEYARHNARS CPSKQRVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-72	FAR1 family protein