PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019191031.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 373aa MW: 41794.4 Da PI: 7.2748

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019191031.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.6e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++ +G g+W+++++ g+ R++k+c++rw +yl XP_019191031.1 14 KGLWSPEEDEKLIKHITSYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	46.3	9.9e-15	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg +++eE+ l++++++ lG++ W+ Ia++++ gRt++++k+ w+ XP_019191031.1 67 RGTFSQEEENLIIELHAVLGNK-WSQIAARLP-GRTDNEIKNLWN 109 899*****************.*****.*******998 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLIKHIT SYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQEEENLIIE LHAVLGNKWS QIAARLPGRT DNEIKNLWNS SIKKKLRQKG 120 IDPNTHKPLS EVENEEKLAS LTNNNNNNNN EKLTLSEGSS ELNFVEAETC NNNNNSNNQV 180 PSLAVMDSYP TMDNVVCSNP MSSNTPPTHE FFLNKTADLS GYLSFLNYTN AAANNIGSSF 240 PMQHPSNSSL FLNPGNPKSN VVLPMETNSS FFENNASFSW GATKESSDLD ETKWSEYLQA 300 PFYLQQNHQA PPNHQDLFGE GKPDTQFAPQ GGSPFTPTTT TATAATTTWL QNQAMYNNSK 360 NFQRLHAAFG QFS

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLIKHIT SYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQEEENLIIE LHAVLGNKWS QIAARLPGRT DNEIKNLWNS SIKKKLRQKG  120
IDPNTHKPLS EVENEEKLAS LTNNNNNNNN EKLTLSEGSS ELNFVEAETC NNNNNSNNQV  180
PSLAVMDSYP TMDNVVCSNP MSSNTPPTHE FFLNKTADLS GYLSFLNYTN AAANNIGSSF  240
PMQHPSNSSL FLNPGNPKSN VVLPMETNSS FFENNASFSW GATKESSDLD ETKWSEYLQA  300
PFYLQQNHQA PPNHQDLFGE GKPDTQFAPQ GGSPFTPTTT TATAATTTWL QNQAMYNNSK  360
NFQRLHAAFG QFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	3e-89	MYB family protein