PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019191029.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 646aa MW: 75341.7 Da PI: 6.4705

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019191029.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.5	9.3e-23	68	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A++ GFsvrk++s+ s + g i+kr+fvC+++g++ +kk+t +++r r++ r+gC+ak+ ++ke ++w+v ++++ HnHel XP_019191029.1 68 EYYRNFARRNGFSVRKERSRLSPQLG-IYKRDFVCYRSGFAPMRKKSTGEHHRDRKSVRCGCDAKMYLSKEVmdgVSQWCVVQFSNVHNHELL 159 69******************8888.***************************************98867789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence
MVSVPSKNLW MRRQQCPCGD WKCFLSYEGE TEEATIASQL ARSESRSTEP MVSPYVGMVF 60 KSDEDAFEYY RNFARRNGFS VRKERSRLSP QLGIYKRDFV CYRSGFAPMR KKSTGEHHRD 120 RKSVRCGCDA KMYLSKEVMD GVSQWCVVQF SNVHNHELLE DEQVRLLPAY RKIQETDQER 180 ILLLSKAGFP IHRIVKVLEL EKEIHGEQLP FLERDVRNFV QNHKKVVQEN DALLTEKRES 240 DTLDLLEACK AAKETDTYFV YDVTVDESNK VENIAWSYGD SVHAYNTFGD VVYFDTTYRS 300 ITYGMLFGVW LGIDNYGKVI FFGCALLQDE VPHSFIWALQ AFLRFMKGRP PRTIITDIDL 360 GIRDAIQSEL PSTKHIISIW NILPKISNWF SLPLGSRYAE FKSEFEVLYD LESVEEFECH 420 WNEMTSRFGL NSDKHIALLF LLRVAISSNY KTRSHDDWQY MHLRTCSPVE EHAKNVLTDF 480 SFSRLQSELI LAMQYTASEM ANGPYILRHF KKDDERLVIW APKDEQIHCS CKEFETSGIL 540 CRHALRVLLM KNYFQLPEKY FLNRWRQESS LLPYDNIRNG YSNGDWFQEF NALTATLFSE 600 SSLTVERSNY VHQELTKQLT RLIDEVKSMP PPNGVVMDSS LSPVNI

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence

MVSVPSKNLW MRRQQCPCGD WKCFLSYEGE TEEATIASQL ARSESRSTEP MVSPYVGMVF  60
KSDEDAFEYY RNFARRNGFS VRKERSRLSP QLGIYKRDFV CYRSGFAPMR KKSTGEHHRD  120
RKSVRCGCDA KMYLSKEVMD GVSQWCVVQF SNVHNHELLE DEQVRLLPAY RKIQETDQER  180
ILLLSKAGFP IHRIVKVLEL EKEIHGEQLP FLERDVRNFV QNHKKVVQEN DALLTEKRES  240
DTLDLLEACK AAKETDTYFV YDVTVDESNK VENIAWSYGD SVHAYNTFGD VVYFDTTYRS  300
ITYGMLFGVW LGIDNYGKVI FFGCALLQDE VPHSFIWALQ AFLRFMKGRP PRTIITDIDL  360
GIRDAIQSEL PSTKHIISIW NILPKISNWF SLPLGSRYAE FKSEFEVLYD LESVEEFECH  420
WNEMTSRFGL NSDKHIALLF LLRVAISSNY KTRSHDDWQY MHLRTCSPVE EHAKNVLTDF  480
SFSRLQSELI LAMQYTASEM ANGPYILRHF KKDDERLVIW APKDEQIHCS CKEFETSGIL  540
CRHALRVLLM KNYFQLPEKY FLNRWRQESS LLPYDNIRNG YSNGDWFQEF NALTATLFSE  600
SSLTVERSNY VHQELTKQLT RLIDEVKSMP PPNGVVMDSS LSPVNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1 family protein