PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019190950.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GATA

Protein Properties

Length: 533aa MW: 58827.1 Da PI: 6.6388

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019190950.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	50.1	3.9e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ XP_019190950.1 7 CYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGT 41 **************88888*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MGKQGPCYHC GVTNTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDFEDY 60 RGSKVKTTPI RIKEAKVLKR KHIYDYPEVG VPTDYSQVLS KGLDEDTSNR SSSGSAVSNS 120 ESCAQFAGTE LSDLTVLSSG PAQPNIWDTM VPSKKRTCVG RPKPSPVEKL TKDLCTILHE 180 QQSSYFSGSS EEDLLFESDK PMVSVEIGHG SMLIRHPSSI GREEESEASS LSVDNKQNPV 240 NEAYSPWPTP SVHIHNKVFN SPSVGTETIK KPTGHGIDQE LVKRDKDRLE KLQMLGHHNS 300 PLCYVDLKDI VNFDEFTSKL TTDEQRQLLK CLPSVDTSAP PDSFRGMFES AQFKENLSCF 360 QKLLAEGVLD NSLSGVKIED CRTLKRFAMC YLTKSKWVEQ YNLLKDVKCK NSSNGFGVAG 420 LPNDVGIGHS INVKRSLDGQ NQKISATTIM KSPKRVASKD SYDENKENDG SLFSPKCLFA 480 LPPYSSSPAL ESSDDQDLLL DVPSNSSFPQ AELLLPSQFD PQASTNSSSV FLK

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MGKQGPCYHC GVTNTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDFEDY  60
RGSKVKTTPI RIKEAKVLKR KHIYDYPEVG VPTDYSQVLS KGLDEDTSNR SSSGSAVSNS  120
ESCAQFAGTE LSDLTVLSSG PAQPNIWDTM VPSKKRTCVG RPKPSPVEKL TKDLCTILHE  180
QQSSYFSGSS EEDLLFESDK PMVSVEIGHG SMLIRHPSSI GREEESEASS LSVDNKQNPV  240
NEAYSPWPTP SVHIHNKVFN SPSVGTETIK KPTGHGIDQE LVKRDKDRLE KLQMLGHHNS  300
PLCYVDLKDI VNFDEFTSKL TTDEQRQLLK CLPSVDTSAP PDSFRGMFES AQFKENLSCF  360
QKLLAEGVLD NSLSGVKIED CRTLKRFAMC YLTKSKWVEQ YNLLKDVKCK NSSNGFGVAG  420
LPNDVGIGHS INVKRSLDGQ NQKISATTIM KSPKRVASKD SYDENKENDG SLFSPKCLFA  480
LPPYSSSPAL ESSDDQDLLL DVPSNSSFPQ AELLLPSQFD PQASTNSSSV FLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-142	GATA family protein