PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019190877.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 655aa MW: 71702.1 Da PI: 6.3021

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019190877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.9	1.6e-12	481	526	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L XP_019190877.1 481 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAIAYINEL 526 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence
MTDYRLPAMN VWAPSADTSD DNASMMEAFI SSDHAPAFWT PPTAMAPPPP HHHHHHSSAS 60 SAVSAASSIV LNQETLQQRL QTLIDGARET WTYAIFWQAS VVDFAGPSLL GWGDGYYKGE 120 EDKGKRNRPA SSPAEQAHRK KVLRELNSLI SGPASTDESV DEEVTDTEWF FLVSMTHSFI 180 NGSGLPGQAF CSSSPIWISG QDKLLSSPCE RARQAQTFGL RTMVCIPSSN GVVELGSTDL 240 ILQSFDLMNK VRVLFNFNNP DMGSISGSAS WAAPPENDPS ALWLTEPTSS SGVDVNTSVQ 300 ENSIPSSSVK EIVFRNENSI PSSTGNNHHD SQPSQYFTRE LNFSEFGFDG ANNNHNNDLR 360 NGNSSHSCKP EAGEILNFGE SVTKRNGNGN SCQFLGGDES KSKKKTATLK ASNEEGMLSF 420 GSGMVKSSGG IGIGDSSDHS DLEASVVKEA DSRAVETLAA AEKRPRKRGR KPANGREEPL 480 NHVEAERQRR EKLNQRFYAL RAVVPNVSKM DKASLLGDAI AYINELKSKL ETSESYIDDL 540 KIQAQSLKKE LSTKEPRHPD PNPKKTTTPH KIPDMDVDVK VMGWDAMIRI QCTKKNHPAA 600 RLMVALKDLD LEVTHASVSV MNDLMIQQAA VKMGTRLYNQ DQLRLALISK LAETL

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence

MTDYRLPAMN VWAPSADTSD DNASMMEAFI SSDHAPAFWT PPTAMAPPPP HHHHHHSSAS  60
SAVSAASSIV LNQETLQQRL QTLIDGARET WTYAIFWQAS VVDFAGPSLL GWGDGYYKGE  120
EDKGKRNRPA SSPAEQAHRK KVLRELNSLI SGPASTDESV DEEVTDTEWF FLVSMTHSFI  180
NGSGLPGQAF CSSSPIWISG QDKLLSSPCE RARQAQTFGL RTMVCIPSSN GVVELGSTDL  240
ILQSFDLMNK VRVLFNFNNP DMGSISGSAS WAAPPENDPS ALWLTEPTSS SGVDVNTSVQ  300
ENSIPSSSVK EIVFRNENSI PSSTGNNHHD SQPSQYFTRE LNFSEFGFDG ANNNHNNDLR  360
NGNSSHSCKP EAGEILNFGE SVTKRNGNGN SCQFLGGDES KSKKKTATLK ASNEEGMLSF  420
GSGMVKSSGG IGIGDSSDHS DLEASVVKEA DSRAVETLAA AEKRPRKRGR KPANGREEPL  480
NHVEAERQRR EKLNQRFYAL RAVVPNVSKM DKASLLGDAI AYINELKSKL ETSESYIDDL  540
KIQAQSLKKE LSTKEPRHPD PNPKKTTTPH KIPDMDVDVK VMGWDAMIRI QCTKKNHPAA  600
RLMVALKDLD LEVTHASVSV MNDLMIQQAA VKMGTRLYNQ DQLRLALISK LAETL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	463	471	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	0.0	bHLH family protein