PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019190783.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 594aa MW: 69195.9 Da PI: 8.415

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019190783.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.8	1.4e-21	47	139	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY eYAke+GF+vr+ +++++ r+ge+ + + Cs eg+++++k++ +e++rr+r+++r+gCka+++++k+++g ++v+ +el H+H l+ XP_019190783.1 47 DFYVEYAKEAGFDVRNGTKRRN-RKGEVSIKYLLCSGEGYKAKTKESqnstKERKRRRRTSNRIGCKARMVMTKRDTGGYKVHAIELRHTHCLC 139 6***************9999.777799999****99999888888899999********************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 594 aa Download sequence
MRTDRHSDTE CEMGIREDGA KYWRPTTQNE KTPYKGQQFE TVDTGIDFYV EYAKEAGFDV 60 RNGTKRRNRK GEVSIKYLLC SGEGYKAKTK ESQNSTKERK RRRRTSNRIG CKARMVMTKR 120 DTGGYKVHAI ELRHTHCLCS DTGKPFLKIN RQLDNGHKTF LAHCAKANIS PTKAFGLFKE 180 MVGSFTDIGA TCIEFCNFRR DLLAYIAEAD GQMVIEDMFK RKEDNPDFYF DFDIDEEAQL 240 TRLFWVDAQS RRNYACFGDV ILSCHSTLDT AQTGTSQYML VFVPVTGVDN HKRCITLWAG 300 LIAKEDVESY EWLLTKFNTA MEYAPRCIIT DQDPALKIVV PQTMPTTRHR FCMWHIMTKV 360 GEKVGVALWH NQDFKKALNS TVWDDKLTID EFKRKWETIM KDYNLKDHRW FAKLYEARVS 420 WIPAYFNDIL MAGLLRTTSR SESENNYFGK FTNHHCILVE FMAQYNSAIG EQRHKHARLI 480 AENEGSYPET KTPLSIEKNA TTVYTINIFY EFQEHVWEAS FTCDIIDKHN RGDIWKYTVK 540 DTNGKMYEVT ETSQAKEIEC ACKKFNRVGI LCRHVMLVMK TRGYESILEK YIVP

Sequence ? help Back to Top

Protein Sequence Length: 594 aa Download sequence

MRTDRHSDTE CEMGIREDGA KYWRPTTQNE KTPYKGQQFE TVDTGIDFYV EYAKEAGFDV  60
RNGTKRRNRK GEVSIKYLLC SGEGYKAKTK ESQNSTKERK RRRRTSNRIG CKARMVMTKR  120
DTGGYKVHAI ELRHTHCLCS DTGKPFLKIN RQLDNGHKTF LAHCAKANIS PTKAFGLFKE  180
MVGSFTDIGA TCIEFCNFRR DLLAYIAEAD GQMVIEDMFK RKEDNPDFYF DFDIDEEAQL  240
TRLFWVDAQS RRNYACFGDV ILSCHSTLDT AQTGTSQYML VFVPVTGVDN HKRCITLWAG  300
LIAKEDVESY EWLLTKFNTA MEYAPRCIIT DQDPALKIVV PQTMPTTRHR FCMWHIMTKV  360
GEKVGVALWH NQDFKKALNS TVWDDKLTID EFKRKWETIM KDYNLKDHRW FAKLYEARVS  420
WIPAYFNDIL MAGLLRTTSR SESENNYFGK FTNHHCILVE FMAQYNSAIG EQRHKHARLI  480
AENEGSYPET KTPLSIEKNA TTVYTINIFY EFQEHVWEAS FTCDIIDKHN RGDIWKYTVK  540
DTNGKMYEVT ETSQAKEIEC ACKKFNRVGI LCRHVMLVMK TRGYESILEK YIVP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	103	RKRRR
2	99	105	RKRRRRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-71	FAR1 family protein