PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019190669.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 297aa MW: 33015.3 Da PI: 8.6142

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019190669.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	5.7e-19	138	192	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k XP_019190669.1 138 RKKLRLTKDQSAILEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTK 192 78889************************************************98 PP
2	HD-ZIP_I/II	129	2e-41	138	227	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+k+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l XP_019190669.1 138 RKKLRLTKDQSAILEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 227 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence
MMVGKEDLGL SLSLSFPEIS RNSASATPLP HLNNPLPSHP SPFNLFHKSP WGPESFPSSD 60 RNSETCRAEP RTLLKGIDVN RAPAATDAEE EAGVSSPNST ISSVSGNKRS ERELGMTMNP 120 EENDARGISD EEDAETSRKK LRLTKDQSAI LEESFKEHNT LNPKQKLALA KRLGLRPRQV 180 EVWFQNRRAR TKLKQTEVDC EFLKRCCENL TEENRRLQKE VQELRALKLS PQFYMQMTPP 240 TTLTMCPSCE RVAAPPSSAA AAVAPAPAPA QSRPLPFNLW APHRPFDPAA GLRPRTN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	143	SRKKLRL
2	187	195	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	1e-95	HD-ZIP family protein