PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019190596.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 824aa MW: 92973.5 Da PI: 8.4064

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019190596.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.5	5.7e-15	127	224	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fY +YA+++GFsv + k+ r+g+ t+r + Cs+eg + ++ + ++rr+r+++r++C+a++ + k+k + v+ ++ eH+ XP_019190596.1 127 FYINYARTCGFSVPHGTLKRG-RDGQLTSRYLLCSREGVKGGGQNPpkpvvggsggSITQRRKRVSNRVNCNARICIIKDKGVGFIVSIFVPEHT 220 9*************99998.8888**********99988899***99999******************************* PP FAR1 87 Hela 90 H ++ XP_019190596.1 221 HRMC 224 98 PP

Sequence ? help Back to Top
Protein Sequence Length: 824 aa Download sequence
MHSIRNGSSN IEDVINEKDT KKCSLGTQKV QEEEDFNILT YFVSQLCDPS LKPSSSDVGV 60 ILISCDSGNT PHVLPEIICS LNVGGQESAG TGGYTSIPVK YWWPAVDSAI TPAIGYRFKT 120 LAEGVYFYIN YARTCGFSVP HGTLKRGRDG QLTSRYLLCS REGVKGGGQN PPKPVVGGSG 180 GSITQRRKRV SNRVNCNARI CIIKDKGVGF IVSIFVPEHT HRMCSEPSKL FMRINRKLDV 240 AQQAFLTNCV KANVGGSKGF RLYKESVGSY ANVGATDTEF HNFKRDLQSY IHDKDGEMII 300 AKFKQRCDIC ENFFFDHYLD EENHLARVFW ADHTGRQSFM SFGDVISFDA TYGTNRYSLV 360 FVPFTGVDHH KRCITFACGL LTREDTESYV WVLERFKAAM GKSPLCVVTD QDPAMKSAIA 420 QILPECRHRY CMWHIMTKVS EKSGVELSKD QTFRTQLNNI VWNETIGISD FETQWQSLME 480 KYNLTGRRWF IKLYTERAFW IPSYFLDLPM SGVLRTTSHS KSENNAYGKS TRPRCSLVEF 540 YVQYESVLET QRHKQCKLNA ESEGSLPEFK TPLALERHIA QVFTLTVFYE LQLEIEAACF 600 YCKVVGIRAD GECIRYDIKG EYNVVHTVEY MPSLTIASCS CKLFERLGLV CRHMFLVFKD 660 AEMASLPARY IAARWCKQEG LANWCAQCSY CPPLESGPNR LWTEIHRCTA MVGSNTVRQT 720 RMLQVIEELR DEFLSDGMSV NPPKSKGVAI AALCGVEPPT SITIKPPAQA KNKGTCKRIK 780 SQRELTIERS GKACRKCGVC GEYAHHNARS CPLKRSVHPD GPLY

Sequence ? help Back to Top

Protein Sequence Length: 824 aa Download sequence

MHSIRNGSSN IEDVINEKDT KKCSLGTQKV QEEEDFNILT YFVSQLCDPS LKPSSSDVGV  60
ILISCDSGNT PHVLPEIICS LNVGGQESAG TGGYTSIPVK YWWPAVDSAI TPAIGYRFKT  120
LAEGVYFYIN YARTCGFSVP HGTLKRGRDG QLTSRYLLCS REGVKGGGQN PPKPVVGGSG  180
GSITQRRKRV SNRVNCNARI CIIKDKGVGF IVSIFVPEHT HRMCSEPSKL FMRINRKLDV  240
AQQAFLTNCV KANVGGSKGF RLYKESVGSY ANVGATDTEF HNFKRDLQSY IHDKDGEMII  300
AKFKQRCDIC ENFFFDHYLD EENHLARVFW ADHTGRQSFM SFGDVISFDA TYGTNRYSLV  360
FVPFTGVDHH KRCITFACGL LTREDTESYV WVLERFKAAM GKSPLCVVTD QDPAMKSAIA  420
QILPECRHRY CMWHIMTKVS EKSGVELSKD QTFRTQLNNI VWNETIGISD FETQWQSLME  480
KYNLTGRRWF IKLYTERAFW IPSYFLDLPM SGVLRTTSHS KSENNAYGKS TRPRCSLVEF  540
YVQYESVLET QRHKQCKLNA ESEGSLPEFK TPLALERHIA QVFTLTVFYE LQLEIEAACF  600
YCKVVGIRAD GECIRYDIKG EYNVVHTVEY MPSLTIASCS CKLFERLGLV CRHMFLVFKD  660
AEMASLPARY IAARWCKQEG LANWCAQCSY CPPLESGPNR LWTEIHRCTA MVGSNTVRQT  720
RMLQVIEELR DEFLSDGMSV NPPKSKGVAI AALCGVEPPT SITIKPPAQA KNKGTCKRIK  780
SQRELTIERS GKACRKCGVC GEYAHHNARS CPLKRSVHPD GPLY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-86	FAR1 family protein