PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019190438.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 560aa MW: 61254.4 Da PI: 9.2524

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019190438.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.4	5.3e-30	60	143	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m+ +r+++lk+plWeevs+km+e g++rs+k+Ckek+en+ k++k++keg+ + + +t+++fdql+ XP_019190438.1 60 RWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVSRKMAELGYHRSSKKCKEKFENVFKYHKRTKEGRAAK--SDGKTYRFFDQLQ 143 8******************************************************************96..45567****98 PP
2	trihelix	109	3e-34	408	493	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r++++ +++++ k+plWe++s++mr+ g++r+pk+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea XP_019190438.1 408 RWPKAEVQALIDLRSSLDVKYQENTPKGPLWEDISAAMRRLGYNRNPKRCKEKWENINKYFKKVKENNKKR-PEDSKTCPYFHQLEA 493 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence
MLGDPGQMMS SSGGGGTTGA AAAESGSAAA AASNSGGSSG TGALPGGFGE ESERNSGGNR 60 WPRQETLALL KIRSDMDAVF RDSSLKGPLW EEVSRKMAEL GYHRSSKKCK EKFENVFKYH 120 KRTKEGRAAK SDGKTYRFFD QLQAFHTPSQ AAAAAQPMVV TAPAGNPPRP VTAALPQFTV 180 SSVQNTSSAF PAPLRAAFAP IPAANNAAFP AGTGNALSYS TSSSTSSDED IQRRHRKKRK 240 WKEFFERVMG DVIAKQEEMQ RKFLEALEKR ERDRTVREDA WRAQETARIK RERDILLQER 300 SMAAAKDAAV INLLQKLSDQ NNTVQIPSIT NNSSDPIIQI QVQIPETLST PPLAPPPPLP 360 QPQEPSPISV APPASMPFSI QTPTPEKNAA AGGGGGESFT TAPPSSSRWP KAEVQALIDL 420 RSSLDVKYQE NTPKGPLWED ISAAMRRLGY NRNPKRCKEK WENINKYFKK VKENNKKRPE 480 DSKTCPYFHQ LEALYSKKAK LEIKPESNPN TARPELVNGD DDGDYDDDED GGGGGYEIAA 540 NMQYGLAQEA THSREEEERK

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence

MLGDPGQMMS SSGGGGTTGA AAAESGSAAA AASNSGGSSG TGALPGGFGE ESERNSGGNR  60
WPRQETLALL KIRSDMDAVF RDSSLKGPLW EEVSRKMAEL GYHRSSKKCK EKFENVFKYH  120
KRTKEGRAAK SDGKTYRFFD QLQAFHTPSQ AAAAAQPMVV TAPAGNPPRP VTAALPQFTV  180
SSVQNTSSAF PAPLRAAFAP IPAANNAAFP AGTGNALSYS TSSSTSSDED IQRRHRKKRK  240
WKEFFERVMG DVIAKQEEMQ RKFLEALEKR ERDRTVREDA WRAQETARIK RERDILLQER  300
SMAAAKDAAV INLLQKLSDQ NNTVQIPSIT NNSSDPIIQI QVQIPETLST PPLAPPPPLP  360
QPQEPSPISV APPASMPFSI QTPTPEKNAA AGGGGGESFT TAPPSSSRWP KAEVQALIDL  420
RSSLDVKYQE NTPKGPLWED ISAAMRRLGY NRNPKRCKEK WENINKYFKK VKENNKKRPE  480
DSKTCPYFHQ LEALYSKKAK LEIKPESNPN TARPELVNGD DDGDYDDDED GGGGGYEIAA  540
NMQYGLAQEA THSREEEERK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	232	240	QRRHRKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-69	Trihelix family protein