PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019190094.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 554aa    MW: 62124.2 Da    PI: 7.397
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019190094.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.71.5e-1126118199
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     ffkv +  ++  +  l lp + + ++   ++   ++++ led+ g + + ++  + ++g+  + +GW++F  ++++++gDfv+++l++   +++v
  XP_019190094.1  26 FFKVIV--SNEFLETLFLPPTSV-KYvsHLV---GQEIYLEDSIGVKSKATV--SYCKGTLAINQGWRQFSLDHNVETGDFVLLYLMNGPVGHFV 112
                     777774..444445699999999.6644333...559***************..77777799************************98899999* PP

                     EEEE-S CS
              B3  94 vkvfrk 99 
                     v+++ +
  XP_019190094.1 113 VHIYGR 118
                     *99876 PP
2B334.92.6e-114885432986
                     -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      ++e+k + led+++r+W   +  +kk++  vl++GWk+F  an+Lk g  +vF+ +g
  XP_019190094.1 488 RTRENKIIFLEDPTNRVWPTLY--QKKQQLRVLAGGWKDFSVANELKPGQECVFQAKG 543
                     3557789***************..9999999************************543 PP
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    
MGASEKCGQF CPLIHHQCSL NPVVSFFKVI VSNEFLETLF LPPTSVKYVS HLVGQEIYLE  60
DSIGVKSKAT VSYCKGTLAI NQGWRQFSLD HNVETGDFVL LYLMNGPVGH FVVHIYGRSG  120
CLKTNFDAPS ERSNKRARTI RSLPEQDEAA GINSMNKEGS PTSFATMPGF GNNHHQPPTI  180
THTPIIDVDS GRKQSSPPVM HFEEPFYMSG QDIGYNQEEN RMHLFDLSSF EMPAFRHAEG  240
NNNFSKGKND PLDLVQQDVQ SEKDTTSLND LVFTTKREAY HSPGRILMDS NGISHFDEKM  300
KPEEKDLMQV RTQGVTQPRS EMPASRPAER KRILIGDKEA IEHAESEVIV LKEKSFRESI  360
MSCKNKKSPC TGSAQMARAQ RGAKESITPC KKKKSPGIGN VQMARAECGG ASDVAKETRV  420
VKREPVEVGN EDTGNERNLR SKSYINVKSE PVDSADTPIL AAPSNDSFLV MVDHQDFLEL  480
PDSWPSIRTR ENKIIFLEDP TNRVWPTLYQ KKQQLRVLAG GWKDFSVANE LKPGQECVFQ  540
AKGFPYYSVD IRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.18e-07B3 family protein