PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019189964.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 611aa MW: 71325.3 Da PI: 8.5287

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019189964.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.3	1.6e-20	35	127	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA e+GF+vr +++++ r ge++ + + Cs+eg+++++k+ +e+++r+r+++r+gC a+++++k ++g ++v+ ++l H H l+ XP_019189964.1 35 DFYETYAMEAGFDVRHGTKRRN-RFGEVYIKYMLCSREGYKAKRKEPnnttKERNKRRRVSNRIGCMARMVITKCDTGGYKVHAVQLRHKHCLC 127 6***************9999.777799999*****999988888788888999******************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence
MEIGDDGDKY WTPATQKQTT PYEGQRFETI EAGIDFYETY AMEAGFDVRH GTKRRNRFGE 60 VYIKYMLCSR EGYKAKRKEP NNTTKERNKR RRVSNRIGCM ARMVITKCDT GGYKVHAVQL 120 RHKHCLCSED SRPFLKINRQ LDIGHKTFLA NCAKANIGPT KAFRLFKEMV GSFTDIGATC 180 IDFCNFRRDL LAYIAEADAQ MVIEDLFKRK EANPDFYFDF DIDEEAQLSR IFWADAESRR 240 NFACFGDVMS FDATYSTNRY KLVFVPFTGV DNHKRCITFG AGLIAKEDVE SYEWLLKRFK 300 TAMEYTPRCT ITDQDPALKI AVPQTMPTTR HRFCMWHIMT KVGEKVGVTL WHNDNFKKEL 360 NSIVWDDTLP VDEFERKWKT LMKDFNLEEH RWFAQLYEAR ASWIPAYFTD IPMGGLLRTT 420 SRSESENSYF GKFTNHHCSL VEFMAQYNSA IGEQRHKQKK LIAENEGSYP ETKSPLSIEK 480 HAANVYTINI FYEFQEEIWT ASFKCHITDK NHTGDIWKYT VEETGKKTFE VTHIPKAEKI 540 ECPCKKFNRV GILCRHALVV MKATGYETIP QKYIVPRWTR DARTQPLYDV PWATRTNIPT 600 TKESEKVANQ L

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence

MEIGDDGDKY WTPATQKQTT PYEGQRFETI EAGIDFYETY AMEAGFDVRH GTKRRNRFGE  60
VYIKYMLCSR EGYKAKRKEP NNTTKERNKR RRVSNRIGCM ARMVITKCDT GGYKVHAVQL  120
RHKHCLCSED SRPFLKINRQ LDIGHKTFLA NCAKANIGPT KAFRLFKEMV GSFTDIGATC  180
IDFCNFRRDL LAYIAEADAQ MVIEDLFKRK EANPDFYFDF DIDEEAQLSR IFWADAESRR  240
NFACFGDVMS FDATYSTNRY KLVFVPFTGV DNHKRCITFG AGLIAKEDVE SYEWLLKRFK  300
TAMEYTPRCT ITDQDPALKI AVPQTMPTTR HRFCMWHIMT KVGEKVGVTL WHNDNFKKEL  360
NSIVWDDTLP VDEFERKWKT LMKDFNLEEH RWFAQLYEAR ASWIPAYFTD IPMGGLLRTT  420
SRSESENSYF GKFTNHHCSL VEFMAQYNSA IGEQRHKQKK LIAENEGSYP ETKSPLSIEK  480
HAANVYTINI FYEFQEEIWT ASFKCHITDK NHTGDIWKYT VEETGKKTFE VTHIPKAEKI  540
ECPCKKFNRV GILCRHALVV MKATGYETIP QKYIVPRWTR DARTQPLYDV PWATRTNIPT  600
TKESEKVANQ L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	92	KRKEPNNTTKERNKRRR
2	89	93	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-97	FAR1 family protein