PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019189882.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 358aa    MW: 40394.7 Da    PI: 9.2828
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019189882.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.81.9e-1460132273
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekd 73 
                     fY++Y  +vGF+ r+++ +ks r+g +++++ vC ++g++++ ++   t+ +rr+r+++r+gCkak++vk++++
  XP_019189882.1  60 FYKQYVGTVGFDCRQHSIRKS-RDGVVVEKHVVCDRQGFKQRVSSFakTTLARRRRVTNRVGCKAKVVVKLKSN 132
                     9*************9999998.9999**************998876668889******************9975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    
MKPDNSTYVC GEGSGGVCDE GNPTDVGVEC NGDGCNEVCV DSLKPLVGQQ FVSLDGAIVF  60
YKQYVGTVGF DCRQHSIRKS RDGVVVEKHV VCDRQGFKQR VSSFAKTTLA RRRRVTNRVG  120
CKAKVVVKLK SNALMLGTKC LLRVARARVN IGSIRSYRLF KEIVGEYSNV GATGVDFKNF  180
KRDLMAYILN GDAQLFIDTL FKRRELCEAF DFEYDVDEVD QLSRVFWADA VSRKNFALFG  240
DVVSFDATYR TNMYKLVFVP FTRIDNHKRS ITFGAGLLTR EDVDSYVWLL HKFKKTMCHD  300
PICVVTDQDT ALKVAVARVF GTSKHRFCMW HIMCKVGEKV GPVLSKDEVF RRKLNGIV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-50FAR1 family protein