PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019189714.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 216aa MW: 24861.4 Da PI: 7.2764

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019189714.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93	1.4e-29	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCd+e+a+iifs++gkl+e++s XP_019189714.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDVEIALIIFSPRGKLHEFAS 59 8***********************************************86 PP
2	K-box	58.5	2.9e-20	82	174	7	99
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +s+e + e+lq+e++ +k +i+ L+ ++R+llG L+s +++e + +eq++++s++ iR++K+++++++ie+l +k k l en +L +k++ XP_019189714.1 82 SSVEGQPIEQLQHEIEVMKHKIDCLEASKRRLLGLRLGSSTFEEVEMIEQHVQRSVNIIRARKMKIFKDSIEQLEEKGKVLTAENAMLWEKYK 174 348888899*******************************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD VEIALIIFSP RGKLHEFASS 60 SSQEIIEKYR KHVMNNRAEN PSSVEGQPIE QLQHEIEVMK HKIDCLEASK RRLLGLRLGS 120 STFEEVEMIE QHVQRSVNII RARKMKIFKD SIEQLEEKGK VLTAENAMLW EKYKGLEPHK 180 VSKEEDDSHD STLYVNGGDE KSDVETELFI GLPEGH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	3e-65	MIKC_MADS family protein