PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019189639.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 295aa    MW: 32726.9 Da    PI: 8.6052
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019189639.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-163481148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed+ll d++++ G g+W+t +++ g+ R++k+c++rw +yl
   XP_019189639.1 34 RGPWTPAEDKLLTDYINKEGEGQWRTLPKMAGLLRCGKSCRLRWMNYL 81
                     89******************************99************97 PP
2Myb_DNA-binding48.22.5e-1587132148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg  T++E++l+++++++lG++ W++Ia ++  gRt++++k++w+++l
   XP_019189639.1  87 RGHITPDEEDLILRLHRLLGNR-WSLIAGRIS-GRTDNEIKNYWNTHL 132
                      6778******************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MRTQSSEKVA AGASPPAKAK GKRTPCCSKV GLKRGPWTPA EDKLLTDYIN KEGEGQWRTL  60
PKMAGLLRCG KSCRLRWMNY LRPTVKRGHI TPDEEDLILR LHRLLGNRWS LIAGRISGRT  120
DNEIKNYWNT HLTKKLISQG IDPRNHKPLL VNPTNSNHPK NHNPSSSSVP IIKPTPIHVG  180
LSNQDKTVKI NSSTTVNVVG GTTNHQIDQP NSVGGTTNHQ TTGNGDEEFN MDIGDDNEDN  240
VGMDFCPDED AFSTIFDSLM NEDVFFAAAQ NNQQSNHHDI TPCPQLLKII IIISL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.17e-75MYB family protein