PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019189534.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 436aa MW: 48358.5 Da PI: 6.1862

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019189534.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31.6	5.6e-10	133	193	2	61
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtg 61 fY++YA vGF r+ +++++ r+g +++++ Cs+eg++++ + + t+k +r+r+++r+g XP_019189534.1 133 FYKQYAGAVGFYCRQGSNRRR-RDGVVVEKHVLCSREGFKQTISVDakTNKVKRRRVTNRVG 193 9************998886.9999************9877664455556666666655 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MEPGNLWCAA VNLDSVGGVC DKDNSTDVGG CDELNLDSVG VEGIGGCDEV KSSDVGVQGS 60 DGSCNEGNST DVGVEGNGGC CNEDYFTDAE VGGSVCDLEI SPGLNKYWCP VCADSLKPHV 120 GQKFDSLDGA IAFYKQYAGA VGFYCRQGSN RRRRDGVVVE KHVLCSREGF KQTISVDAKT 180 NKVKRRRVTN RVGYKVNRSL DAGHQMFIAS CFRANIGSVR SYRLFKEIVG DYSNVGATGV 240 DFKNFKRDLM AYILNGDAQL FIDTLFKRRE LCEAFDFEYD VDDVDQLSSV FWADAVSRKN 300 FALFGDVVSF DATYRTNRYK LVFVPFTGID NHKRSITFGA GLLTREDVDS YVWLLEKFKK 360 TMRHDPICVV TDQDPAVKVV VARVFGTSKH RFCMWHIMCK VGEKVGPVLS KDEVFRRKLN 420 GIVWNKSLDS NAFEDA

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MEPGNLWCAA VNLDSVGGVC DKDNSTDVGG CDELNLDSVG VEGIGGCDEV KSSDVGVQGS  60
DGSCNEGNST DVGVEGNGGC CNEDYFTDAE VGGSVCDLEI SPGLNKYWCP VCADSLKPHV  120
GQKFDSLDGA IAFYKQYAGA VGFYCRQGSN RRRRDGVVVE KHVLCSREGF KQTISVDAKT  180
NKVKRRRVTN RVGYKVNRSL DAGHQMFIAS CFRANIGSVR SYRLFKEIVG DYSNVGATGV  240
DFKNFKRDLM AYILNGDAQL FIDTLFKRRE LCEAFDFEYD VDDVDQLSSV FWADAVSRKN  300
FALFGDVVSF DATYRTNRYK LVFVPFTGID NHKRSITFGA GLLTREDVDS YVWLLEKFKK  360
TMRHDPICVV TDQDPAVKVV VARVFGTSKH RFCMWHIMCK VGEKVGPVLS KDEVFRRKLN  420
GIVWNKSLDS NAFEDA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	188	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-44	FAR1 family protein