PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019189427.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 580aa MW: 66725.6 Da PI: 8.0937

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019189427.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.1	8.1e-20	49	135	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA++vGFsvrk +++ + ++++ ++ f+Csk g++ + ++ + ++ rtgC a+++ kdg w vtk + HnHel+ XP_019189427.1 49 LYNNYAYRVGFSVRKGNQRCKVYSKTVQMKMFMCSKAGFKFKANTG--VKAYSKIDIRTGCGACVQFDVGKDGLWTVTKHIKVHNHELC 135 7*************************************998877..888999********************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence
MDEAIDHRDQ AVDGLHTVPV SEDLVADSSS LDPIELDIDG SSSIPVYELY NNYAYRVGFS 60 VRKGNQRCKV YSKTVQMKMF MCSKAGFKFK ANTGVKAYSK IDIRTGCGAC VQFDVGKDGL 120 WTVTKHIKVH NHELCAVDKS HLLRSHRNVG DNQLLYLKDL KKIGVAMADG IRFLKHQAGG 180 SPLIGFTNRD AYNSIASDTL KRLDGTDSNS LIEIFRKRQS IESDFFFDFE VDCDLRLCNT 240 EAGFEFYWTR LVADYKCPKN TWIQKLYDYR EKWCPTFNKD YFSGGILSSQ RSETTNHSIS 300 RRLSKTAGLC DFYSSFVSVI SEWRSKENGE DFRCAQGVPT MMMEHVRLLL HARDVYTIEI 360 YYLFEEQFMK GNVCHQEMVL NDGFHLKYHV RRPDIEIIRH EVSFKLANLD ISCGCKLISE 420 LGILCCHCLR ILHVHCVSSI PDKYIMKMWT KKVADGRNMN IGPMFYKVGV PPSIWVVEIS 480 RKFQRLIASS QANSVTRQFC DEAVEDAKKK VEAEIGYVHI GVWCFIFKWC RSKSFKPEIK 540 SRWLWKVYPR LPEMGTLYIQ VLGVQSYQFS NDLDDNAVVD

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence

MDEAIDHRDQ AVDGLHTVPV SEDLVADSSS LDPIELDIDG SSSIPVYELY NNYAYRVGFS  60
VRKGNQRCKV YSKTVQMKMF MCSKAGFKFK ANTGVKAYSK IDIRTGCGAC VQFDVGKDGL  120
WTVTKHIKVH NHELCAVDKS HLLRSHRNVG DNQLLYLKDL KKIGVAMADG IRFLKHQAGG  180
SPLIGFTNRD AYNSIASDTL KRLDGTDSNS LIEIFRKRQS IESDFFFDFE VDCDLRLCNT  240
EAGFEFYWTR LVADYKCPKN TWIQKLYDYR EKWCPTFNKD YFSGGILSSQ RSETTNHSIS  300
RRLSKTAGLC DFYSSFVSVI SEWRSKENGE DFRCAQGVPT MMMEHVRLLL HARDVYTIEI  360
YYLFEEQFMK GNVCHQEMVL NDGFHLKYHV RRPDIEIIRH EVSFKLANLD ISCGCKLISE  420
LGILCCHCLR ILHVHCVSSI PDKYIMKMWT KKVADGRNMN IGPMFYKVGV PPSIWVVEIS  480
RKFQRLIASS QANSVTRQFC DEAVEDAKKK VEAEIGYVHI GVWCFIFKWC RSKSFKPEIK  540
SRWLWKVYPR LPEMGTLYIQ VLGVQSYQFS NDLDDNAVVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	1e-21	FAR1 family protein