PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019189153.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 249aa MW: 28133.7 Da PI: 7.8782

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019189153.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.6	6.7e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd++ ++G g+W++ +++ g+ R++k+c++rw +yl XP_019189153.1 14 KGPWTKEEDQILVDYISRHGHGNWRALPKRAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	45.8	1.4e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ eE++ ++++++ lG++ W+ Ia++++ gRt++++k+ w++ XP_019189153.1 67 RGNFSHEEEDAIIKLHQALGNR-WSVIAARLP-GRTDNEIKNIWHT 110 89******************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MGRSPCCEKM GLKKGPWTKE EDQILVDYIS RHGHGNWRAL PKRAGLLRCG KSCRLRWINY 60 LRPDIKRGNF SHEEEDAIIK LHQALGNRWS VIAARLPGRT DNEIKNIWHT RLKKRLNDYG 120 LVPPQPSLKS KSQPLKPFAM DLQTPSSPPH SSTTTSTDVH ASSYCSISSH CVVSDAVLLQ 180 SDLPEVDESF WSQVFSSENS SDAGDLPATV DGESRFDSTK NETYETNSSV EFWHRLFSKT 240 ENLPVLPEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	2e-75	MYB family protein