PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019189146.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 773aa MW: 85829.3 Da PI: 7.2209

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019189146.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.2	1.5e-19	123	212	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA +vGF+ r+++ +k r+g ++++ C+++g++++ ++ t+ ++r+r+++r+gCkak+++k++++g ++v+ +e+ H+H+++ XP_019189146.1 123 FYKQYAGTVGFDCRQHSIRKD-RDGVAVEKHVECNRQGFKQRVSRVakTTLAKRRRVTNRVGCKAKIVIKRKSNGLYVVHYFEERHTHSMC 212 9*********999888887.9999*********998776655888999*********************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 773 aa Download sequence
MWCAADVLQS GGVCGEGSGG VCDNSTDVCG EGSGGVCDEG NPTDVGVECN GDGCDDGNVT 60 DVGVAGSGVG CDEDYLADVG VQGSVCVLET SPGLTKYWRP VCADSVKPIV GQQFVSLDGA 120 VVFYKQYAGT VGFDCRQHSI RKDRDGVAVE KHVECNRQGF KQRVSRVAKT TLAKRRRVTN 180 RVGCKAKIVI KRKSNGLYVV HYFEERHTHS MCSIIARQFL KVNRSLDAGH QMFIASCVRA 240 NIGSVRSYRL FKEIVGEYSS VGATGVDFKN FKRDLMAYIL NGDAQLFIDT LFKRRELCEA 300 FDFEYDVDEV DQLSRIFWVD AVSRKNFALF GDVVSFDATY RTNRYKLVFV PFTGIDNHKR 360 SITFGAGLLT REDVESYVWL LEKFKKTMCH DPICVVTNQD PALKVAVARV FGTSKHKFCM 420 WHIMCKVGEK VGPILSKDEV FRRKLNGIVW NKSLDSKSFE EAWSCIMEEY GLGDNGWFRY 480 LFESRTYWAS PYFHDEFMSG LVRTTSRSES QNSFFGTFSN GHSSLVEFLV HFGSVVGVQR 540 HAQAKLNADC ESCFPVLKTP LALEKHAMDV YTISVFYDVQ VEICAACYSC QVVSLCDCDG 600 HVSYGIKDGA QRAWYVELVC GVSVDKGCLF EANIDDTIVD RSSKVENVRI FTNLLWSDIY 660 ACVGLADGNI ERLSQLRRVI CEQRQLFLQE GSEDSSGVVA GGSKQSVINS FCGDVSQGST 720 VEVRDPIQAK NKGSGKRLKS TREKAASKCV KQSRKCHTCD EYGHNSRTCP LNG

Sequence ? help Back to Top

Protein Sequence Length: 773 aa Download sequence

MWCAADVLQS GGVCGEGSGG VCDNSTDVCG EGSGGVCDEG NPTDVGVECN GDGCDDGNVT  60
DVGVAGSGVG CDEDYLADVG VQGSVCVLET SPGLTKYWRP VCADSVKPIV GQQFVSLDGA  120
VVFYKQYAGT VGFDCRQHSI RKDRDGVAVE KHVECNRQGF KQRVSRVAKT TLAKRRRVTN  180
RVGCKAKIVI KRKSNGLYVV HYFEERHTHS MCSIIARQFL KVNRSLDAGH QMFIASCVRA  240
NIGSVRSYRL FKEIVGEYSS VGATGVDFKN FKRDLMAYIL NGDAQLFIDT LFKRRELCEA  300
FDFEYDVDEV DQLSRIFWVD AVSRKNFALF GDVVSFDATY RTNRYKLVFV PFTGIDNHKR  360
SITFGAGLLT REDVESYVWL LEKFKKTMCH DPICVVTNQD PALKVAVARV FGTSKHKFCM  420
WHIMCKVGEK VGPILSKDEV FRRKLNGIVW NKSLDSKSFE EAWSCIMEEY GLGDNGWFRY  480
LFESRTYWAS PYFHDEFMSG LVRTTSRSES QNSFFGTFSN GHSSLVEFLV HFGSVVGVQR  540
HAQAKLNADC ESCFPVLKTP LALEKHAMDV YTISVFYDVQ VEICAACYSC QVVSLCDCDG  600
HVSYGIKDGA QRAWYVELVC GVSVDKGCLF EANIDDTIVD RSSKVENVRI FTNLLWSDIY  660
ACVGLADGNI ERLSQLRRVI CEQRQLFLQE GSEDSSGVVA GGSKQSVINS FCGDVSQGST  720
VEVRDPIQAK NKGSGKRLKS TREKAASKCV KQSRKCHTCD EYGHNSRTCP LNG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	178	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-77	FAR1 family protein