PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019188974.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 707aa MW: 81242.3 Da PI: 8.1109

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019188974.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.5	9.2e-23	44	136	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA vGF+vr+s+ k++k ++ i+k++ vCs+eg++e+++k+ t+k++r+r+++r+gC a+++++++k+gk++v++++ H+H l+ XP_019188974.1 44 FYTTYAGIVGFDVRRSSDKRNKYSQ-IMKKQVVCSREGFKETKDKEtieeeTTKQKRRRTTNRVGCPARFVLTLNKEGKYVVKTFVDRHTHVLC 136 9**************99996666.**************99999999999**********************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence
MDNGGTCVMD VSPGGTHTWI PECDASLNPF EGQKFDTMEN GITFYTTYAG IVGFDVRRSS 60 DKRNKYSQIM KKQVVCSREG FKETKDKETI EEETTKQKRR RTTNRVGCPA RFVLTLNKEG 120 KYVVKTFVDR HTHVLCEEKY KRFMKVNRKI DIGHQEFIRN CGKVNVGASK SFDIYAEMVG 180 GPENVGATQQ DFKNYRRELL AYMKEKDIQM VISQYLEKKN DCVDMYFEYD VNEKDQLARV 240 FWADRRARLH YGAFGDVVSF DATYKTNRYN LVFVPFTGID NHKRCVTFAA GLIDKEDVES 300 YSWILRNFKN AMGSTPPIVI TDQDPAMKVA IETEFPGTRH RYCMWHIMTK VGDKVGDTLA 360 KNEEFRRALN AVVWNEESTT IGFESAWNEV IQKYGLLENR WLKRMYDERA SWVPPFFEDV 420 FMGGLLRTTS RSEAENRIFQ SNTNKHLCLV EFFKHFESAV RKQRDKHLEL SAACIGQTPP 480 LKTLLRIERE AATVYTLTVF SDVQKEICEG WSTCRVRSYT EAEGVKTYVV EDGTNKRYTV 540 IVEDVSNNTS CTCRLYTRIG LLCRHVFVVL KDERIDHIPP QHITPRWTKE AVKHIEKGAG 600 VRRQIGANNN GHNTTVEGKV INTIYRCLGM ARGNGEKMQQ ITNVIEELEA TLCDKEVNRA 660 EGNAKRAVME AYCGVPEPDT IKVHPPPSCE DQRVWQANEI SQGGGNY

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence

MDNGGTCVMD VSPGGTHTWI PECDASLNPF EGQKFDTMEN GITFYTTYAG IVGFDVRRSS  60
DKRNKYSQIM KKQVVCSREG FKETKDKETI EEETTKQKRR RTTNRVGCPA RFVLTLNKEG  120
KYVVKTFVDR HTHVLCEEKY KRFMKVNRKI DIGHQEFIRN CGKVNVGASK SFDIYAEMVG  180
GPENVGATQQ DFKNYRRELL AYMKEKDIQM VISQYLEKKN DCVDMYFEYD VNEKDQLARV  240
FWADRRARLH YGAFGDVVSF DATYKTNRYN LVFVPFTGID NHKRCVTFAA GLIDKEDVES  300
YSWILRNFKN AMGSTPPIVI TDQDPAMKVA IETEFPGTRH RYCMWHIMTK VGDKVGDTLA  360
KNEEFRRALN AVVWNEESTT IGFESAWNEV IQKYGLLENR WLKRMYDERA SWVPPFFEDV  420
FMGGLLRTTS RSEAENRIFQ SNTNKHLCLV EFFKHFESAV RKQRDKHLEL SAACIGQTPP  480
LKTLLRIERE AATVYTLTVF SDVQKEICEG WSTCRVRSYT EAEGVKTYVV EDGTNKRYTV  540
IVEDVSNNTS CTCRLYTRIG LLCRHVFVVL KDERIDHIPP QHITPRWTKE AVKHIEKGAG  600
VRRQIGANNN GHNTTVEGKV INTIYRCLGM ARGNGEKMQQ ITNVIEELEA TLCDKEVNRA  660
EGNAKRAVME AYCGVPEPDT IKVHPPPSCE DQRVWQANEI SQGGGNY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-88	FAR1 family protein