PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019188958.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 636aa MW: 70120 Da PI: 8.3055

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019188958.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.6	2.7e-15	90	166	16	90
FAR1 16 kskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 k++s +++r+g +++++vC+ +g++++ ++ t+ rr+r+++r+gCkak+++k++++g ++v+++e+ H+H+l+ XP_019188958.1 90 KQRSIRKSRDGVAVEKHLVCNGQGFKQRVSSVakTTLVRRQRVTNRVGCKAKVVIKLKSNGLYVVHSFEERHTHSLC 166 5566677799*************99877665578889***********************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence
MWCAAVDLES FGICDKDNST DVCGEGSGGV CDEGNPTDVG VECSGDGCDE GNVTDVGVGG 60 SGVGCDEDYL TNVGVQGSSC VLEISPGLTK QRSIRKSRDG VAVEKHLVCN GQGFKQRVSS 120 VAKTTLVRRQ RVTNRVGCKA KVVIKLKSNG LYVVHSFEER HTHSLCSIIA RKFLKVNRSL 180 YAGHQMFIAS CARANIGSVR SYRLFKEIVG EYSNVGAIGV DFKNFKRDLM TYILNAFKGF 240 FWADAVSRKN FALFGDVVSF DATYRTNRYK LVFVPFTGID NHKRSITFGA GLLTREHVDS 300 YVWLLEKFKK TMCHDPICVV TDQDPALKVA VACVFGTSKH RFCMWHIMCK VGEKVGPVLS 360 KDEVFSKKLN GIVWNKSLDS KSFEDAWSCI MEKYGLGDNG LVRITSRSES QNGFFGTFSN 420 GHSSLVEFLI PLALEKHAMD VYTISVFYDV QVEFCAACYS CQVVSLCDCD GHVSYGIKDG 480 AQRAWCVELV LSDYTATYSC KMFERMGYLV SRWTKGACLK PIFHIDDTIV DQSSKVENLR 540 RVICEQRQLF LQDGSENGSG VVASGSKQSV INSFCGAVSQ GSTVEVRDPI QAKNKGSGKR 600 LKSTREKAAS KCVKQSRKCH TCDEYGHNSR TCPLNG

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence

MWCAAVDLES FGICDKDNST DVCGEGSGGV CDEGNPTDVG VECSGDGCDE GNVTDVGVGG  60
SGVGCDEDYL TNVGVQGSSC VLEISPGLTK QRSIRKSRDG VAVEKHLVCN GQGFKQRVSS  120
VAKTTLVRRQ RVTNRVGCKA KVVIKLKSNG LYVVHSFEER HTHSLCSIIA RKFLKVNRSL  180
YAGHQMFIAS CARANIGSVR SYRLFKEIVG EYSNVGAIGV DFKNFKRDLM TYILNAFKGF  240
FWADAVSRKN FALFGDVVSF DATYRTNRYK LVFVPFTGID NHKRSITFGA GLLTREHVDS  300
YVWLLEKFKK TMCHDPICVV TDQDPALKVA VACVFGTSKH RFCMWHIMCK VGEKVGPVLS  360
KDEVFSKKLN GIVWNKSLDS KSFEDAWSCI MEKYGLGDNG LVRITSRSES QNGFFGTFSN  420
GHSSLVEFLI PLALEKHAMD VYTISVFYDV QVEFCAACYS CQVVSLCDCD GHVSYGIKDG  480
AQRAWCVELV LSDYTATYSC KMFERMGYLV SRWTKGACLK PIFHIDDTIV DQSSKVENLR  540
RVICEQRQLF LQDGSENGSG VVASGSKQSV INSFCGAVSQ GSTVEVRDPI QAKNKGSGKR  600
LKSTREKAAS KCVKQSRKCH TCDEYGHNSR TCPLNG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-56	FAR1 family protein