PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019188787.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 546aa MW: 62279.9 Da PI: 7.8394

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019188787.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.4	5.8e-19	80	179	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 +fY++YA+++GF+vr++++k+ r+g+it++ Cs++g++ ++ + + ++r+r+++r+gC+ak+ k+ k + +ev+ +e+ XP_019188787.1 80 EFYKAYATTTGFDVRRASEKTD-RQGQITWKYVLCSRSGFKLPTGQGdgvgvlsaedNAPTKRRRVTNRVGCNAKIIFKRAKdGNGYEVAAIEKR 173 6*************998777.8888************99999***99999999**************97889***** PP FAR1 85 HnHela 90 H+H l+ XP_019188787.1 174 HTHLLC 179 *998 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MVVKPNGRAL RLYPECHTSP KHIELTNLHP LTGEDGLTGK PTGCLMNISP GSTKYWTPQC 60 EVAKTPFEGQ VFTTLEGGIE FYKAYATTTG FDVRRASEKT DRQGQITWKY VLCSRSGFKL 120 PTGQGDGVGV LSAEDNAPTK RRRVTNRVGC NAKIIFKRAK DGNGYEVAAI EKRHTHLLCT 180 AVSRPFMKAN RNLDLGHQNF IINCAKANIG YTKSFTLYEE MVGGFENVGA TVTDFGNYKR 240 DIMAYIEGAD AQLVIDKFMA KKEVSTDFYF AHDVDELDQL CRIFWADPQA RHNFKQFGDV 300 MSFDATYSTN RYKLVFVPFT GVDHHKKSVT FAAGLIAKED VDSYTWLLEH FKTAMGKVPT 360 CTVTNQDPAM RVAISRVFYT TCHRYCMWHI MTKVCEKVGP TLARNEDFLR SLNSVVWNET 420 QTISEFEAAW QTVMEKHELV DHRWFTHLFE MREYWIPAFF NDMFMDGLMK TTSRSESENN 480 VFNSCTSPHL SLTDFFIKFE KAIDKQRHTQ TRLNADCEDK FPELKTTLLL ERQAATTYTI 540 AATRDT

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MVVKPNGRAL RLYPECHTSP KHIELTNLHP LTGEDGLTGK PTGCLMNISP GSTKYWTPQC  60
EVAKTPFEGQ VFTTLEGGIE FYKAYATTTG FDVRRASEKT DRQGQITWKY VLCSRSGFKL  120
PTGQGDGVGV LSAEDNAPTK RRRVTNRVGC NAKIIFKRAK DGNGYEVAAI EKRHTHLLCT  180
AVSRPFMKAN RNLDLGHQNF IINCAKANIG YTKSFTLYEE MVGGFENVGA TVTDFGNYKR  240
DIMAYIEGAD AQLVIDKFMA KKEVSTDFYF AHDVDELDQL CRIFWADPQA RHNFKQFGDV  300
MSFDATYSTN RYKLVFVPFT GVDHHKKSVT FAAGLIAKED VDSYTWLLEH FKTAMGKVPT  360
CTVTNQDPAM RVAISRVFYT TCHRYCMWHI MTKVCEKVGP TLARNEDFLR SLNSVVWNET  420
QTISEFEAAW QTVMEKHELV DHRWFTHLFE MREYWIPAFF NDMFMDGLMK TTSRSESENN  480
VFNSCTSPHL SLTDFFIKFE KAIDKQRHTQ TRLNADCEDK FPELKTTLLL ERQAATTYTI  540
AATRDT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	144	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-73	FAR1 family protein