PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019188719.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 507aa MW: 54768.2 Da PI: 7.5616

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019188719.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.3	3.3e-09	327	374	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_019188719.1 327 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 374 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence
MEKDYFLNGA TPPPPFPFSV PSWSSSDCIM NPNWDDSLDH YTQFESALSS MESSPAASAV 60 SEGLALRELI GKLGNICSSP PSFIAAGAVA GSYSGNSDAN INIHSANTSC YSTPLSSPPK 120 LRLPSLGNHH PPPLPALSAD PGFAERAAKF SCFGSRSFNG RTSQLGSETP YRSGAPLMGN 180 ARLPRVSSSP ALKQGGSPVQ NRNSGLSRPE LKPENPFPPV PGSDANSNEA SSVSEQVPST 240 GSKSPNDLTS RKRKAPSRGK AKEDKGIEAD NNNNPSLKRS KATEGNGSEN GGNKTTGDDS 300 EKQSQKPPEP PKDYIHVRAR RGQATDSHSL AERVRREKIS ERMKLLQDLV PGCNKVTGKA 360 LMLDEIINYV QSLQRQVEFL SMKLASVNPR LDFNIDNHLM PPKDICQPNG SMCPLDSSLP 420 TFHVMHQHLQ IPQQQHTNGG VSRCQVDPLG MQLPSLDGFG ETLSQFPLCD DDLQSVVQMG 480 LNQNPRKDMA LHPQNYPVSS PHMKMEL

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence

MEKDYFLNGA TPPPPFPFSV PSWSSSDCIM NPNWDDSLDH YTQFESALSS MESSPAASAV  60
SEGLALRELI GKLGNICSSP PSFIAAGAVA GSYSGNSDAN INIHSANTSC YSTPLSSPPK  120
LRLPSLGNHH PPPLPALSAD PGFAERAAKF SCFGSRSFNG RTSQLGSETP YRSGAPLMGN  180
ARLPRVSSSP ALKQGGSPVQ NRNSGLSRPE LKPENPFPPV PGSDANSNEA SSVSEQVPST  240
GSKSPNDLTS RKRKAPSRGK AKEDKGIEAD NNNNPSLKRS KATEGNGSEN GGNKTTGDDS  300
EKQSQKPPEP PKDYIHVRAR RGQATDSHSL AERVRREKIS ERMKLLQDLV PGCNKVTGKA  360
LMLDEIINYV QSLQRQVEFL SMKLASVNPR LDFNIDNHLM PPKDICQPNG SMCPLDSSLP  420
TFHVMHQHLQ IPQQQHTNGG VSRCQVDPLG MQLPSLDGFG ETLSQFPLCD DDLQSVVQMG  480
LNQNPRKDMA LHPQNYPVSS PHMKMEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	4e-86	bHLH family protein