PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019188708.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 334aa MW: 37058.1 Da PI: 9.8469

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019188708.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101	7.1e-32	267	325	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh+ XP_019188708.1 267 QDEYCWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHP 325 7***********************9988**************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MEEIEEANKA AVHSCHRIIS LLSQPHDESH YGKLLIESGD AVHKFKRVVS LLNSKLGHAR 60 VRKGNKTHQT PLSPKFLLEN PVTGNDDRPK ALHLLPINSL EILNQERSCT VNSALTLGNP 120 LSHDLKLHGK SPIQLPHYTS MTNYQFPKQQ QRHGEMICQS SNSGISLNFD STTCTPTLSS 180 TRSFISSLSV DGSVANMDGS AFRLIGASCS GDQSTFQRKK RCSGKGEDGS VKCGSSGRCH 240 CSKKRKQRVK RTIKVPAISN KLADIPQDEY CWRKYGQKPI KGSPHPRGYY KCSSMRGCPA 300 RKHVERCLED PSMLIVTYEG EHNHPRLASQ STNT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	218	246	RKKRCSGKGEDGSVKCGSSGRCHCSKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04670.1	8e-89	WRKY family protein