PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019188221.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 413aa MW: 45393.5 Da PI: 9.0947

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019188221.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.9	5.4e-11	52	75	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C +++rtG+C +G++C+F+H++ XP_019188221.1 52 SDCAYYMRTGFCGFGSKCRFNHPR 75 78********************96 PP
2	zf-CCCH	37.7	3.3e-12	94	120	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++rtG Ck+G++CkF+H++ XP_019188221.1 94 PGEPTCQYYLRTGLCKFGASCKFHHPR 120 57899********************96 PP
3	zf-CCCH	35.7	1.5e-11	142	166	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G +C+F+H++ XP_019188221.1 142 EKECSYYLKTGHCKFGVTCTFHHPQ 166 689********************97 PP
4	zf-CCCH	37.2	4.9e-12	277	303	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C ++ +tG Ck+G++CkF+H+p XP_019188221.1 277 PGQPECEYYKKTGNCKFGSSCKFHHPP 303 5789*********************97 PP
5	zf-CCCH	31	4.4e-10	324	349	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + C+f++r G+Ck+G++CkF H++ XP_019188221.1 324 GVQACCFYLRKGFCKFGGNCKFDHPM 349 5678********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MELYGQSRAK DGLQIDRRAV WAPVRSVTGK EESIRRLGLW VTEGYPERLG VSDCAYYMRT 60 GFCGFGSKCR FNHPRGFGSV GLPQMRIWVY PERPGEPTCQ YYLRTGLCKF GASCKFHHPR 120 NAGGSLSNAP LNIYGFPLRP EEKECSYYLK TGHCKFGVTC TFHHPQPAAI SGQATAHPFY 180 LTVQSLPGPS PEQYSGASSG FRVARHPFLP DSYTPSTYGP VLLHSGVGPV PSWSQSGHVI 240 PALSSTPTFA GPYSPLHTTT GLSSCAQREK GFFPERPGQP ECEYYKKTGN CKFGSSCKFH 300 HPPDWVPPNS NCSFSPLGLP LRPGVQACCF YLRKGFCKFG GNCKFDHPME TVHYSPSVSS 360 SSLTDAPPYM VQPGFADTSF SRSRLALPLP SVGFKLSHTA PSPTSRSNMR SHC

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MELYGQSRAK DGLQIDRRAV WAPVRSVTGK EESIRRLGLW VTEGYPERLG VSDCAYYMRT  60
GFCGFGSKCR FNHPRGFGSV GLPQMRIWVY PERPGEPTCQ YYLRTGLCKF GASCKFHHPR  120
NAGGSLSNAP LNIYGFPLRP EEKECSYYLK TGHCKFGVTC TFHHPQPAAI SGQATAHPFY  180
LTVQSLPGPS PEQYSGASSG FRVARHPFLP DSYTPSTYGP VLLHSGVGPV PSWSQSGHVI  240
PALSSTPTFA GPYSPLHTTT GLSSCAQREK GFFPERPGQP ECEYYKKTGN CKFGSSCKFH  300
HPPDWVPPNS NCSFSPLGLP LRPGVQACCF YLRKGFCKFG GNCKFDHPME TVHYSPSVSS  360
SSLTDAPPYM VQPGFADTSF SRSRLALPLP SVGFKLSHTA PSPTSRSNMR SHC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-136	C3H family protein