PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019188031.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TALE

Protein Properties

Length: 334aa MW: 37677.8 Da PI: 5.3756

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019188031.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29	1.8e-09	266	298	23	55
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++ee+ +L++ +gL+++q+ +WF N+R ++ XP_019188031.1 266 PYPTEEEKNKLSEATGLDQKQINNWFINQRKRH 298 8*****************************885 PP
2	ELK	36.5	1e-12	219	239	2	22
ELK 2 LKhqLlrKYsgyLgsLkqEFs 22 +K++L+rKYsgyL+sL++EF+ XP_019188031.1 219 IKEMLMRKYSGYLSSLRKEFL 239 8*******************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MDELYGIHSV LAPSNAPSNN NNNVFSLGVD DIHHHHNHHH HHHHHLLVTS SNDNYYNSDE 60 NSKGGGGGVE MMSDVVKAQI ASHPLYPNLV SAYIQCRKVA APPEMAALLE ELSKVTQPIT 120 TAEIGADPEL DEFMESYCEV LYKYKEELSK PFDEAKTFLS SIESQLSNLC KDTFPTTSFN 180 SYHSDEAGGT SEEDLSCGEV EVAESQEYLN NNSEGDQQIK EMLMRKYSGY LSSLRKEFLK 240 KRKKGKLPKD ARVALLDWWN SHYRWPYPTE EEKNKLSEAT GLDQKQINNW FINQRKRHWR 300 PSEDMRFALM EGVSGDVAGS MFFDAGGGTG NLGI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	234	243	LRKEFLKKRK
2	240	244	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	2e-69	TALE family protein