PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019187708.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 388aa    MW: 42336.9 Da    PI: 8.3634
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019187708.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-12316361655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L++l+P+     +k  + a++L  AveYIk+Lq
  XP_019187708.1 316 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTADMLDFAVEYIKDLQ 361
                     689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    
MFDDSRELSP SSGSIFSQNS RARKGLFPRS REVFMDPSGN TEFGRNSGLL RFRSAPSSVL  60
ENFTHGVEKS DGSGSRFNLG SSNGGLVSQG SLNLEDSGYK GFVNGFSGLP PQYPRQSSSA  120
QLVDGGGLLG SNLMRQNSSP PGLFSHLTPQ NGYDAMKGYR MAVHGGHGDT SLSSNKLKSP  180
LSYSSGCVGM LSQITEVENE SNAESCENDD EKPGNGNADT RFFGHGFPFA SWSDPPNFAE  240
NLNGLKRELD NDTNLFAAAN TQVGDMGTQP QSLSHPLSSQ KTDSSAISAM EKLSNFPDTV  300
PWNIRAKRGC ATHPRSIAER VRRTRISERM RKLQDLVPNM DKQTNTADML DFAVEYIKDL  360
QRQYKTLADC RDKCKCSAMK KPGLNQRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-74bHLH family protein