PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019187683.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 544aa MW: 60253.2 Da PI: 7.9612

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019187683.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.8	4.7e-33	220	277	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkver+ d++++ei+Y+g+Hnh+k XP_019187683.1 220 EDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERNL-DGHITEIVYKGNHNHPK 277 7**************************************.*************85 PP
2	WRKY	106	2e-33	384	442	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d ++v++tYeg+Hnh+ XP_019187683.1 384 LDDGYRWRKYGQKVVKGNPNPRSYYKCTFLGCPVRKHVERASHDLRAVITTYEGKHNHD 442 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence
MSSSGGSLNT CVDSHHHNNS YSSFSSFSFT DLLSNNEESK NPEKGSSSSS FSWGISDTHE 60 IPKFKSFPPA SLPISPSPVS PSTFLNIPPA LSPSVLLDSP VFFSTSNILP LSPTTGAFAG 120 LNNPKEDERK SNDFSFQSRA ASSSSMFQSS LGRNSMEEQM SRQQQPNMGS ADFSTIMKTD 180 VKPELLPQTH SFSQENPAMQ QPAMVHYSQP SQYARAQKSE DGYNWRKYGQ KQVKGSENPR 240 SYYKCTFPNC PTKKKVERNL DGHITEIVYK GNHNHPKPQS TRRSSSSSQS VQINPESFNI 300 DATNQSNMLL GSTQRDSFIT PENSSASFGD EDLEQGSPSR DDDENEPEAK RWKGDNENEA 360 ISSASRTVRE PRIVVQTTSD IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TFLGCPVRKH 420 VERASHDLRA VITTYEGKHN HDVPAARGSG GYSLNKPQQP QPAGNMVSSA APVALRPSTM 480 PNHSLNYQNA IFNPRPQATQ SQQPITLQML QRPAGNLGYS SFGNNYMSTG KEEPKDDFFS 540 SFLN

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence

MSSSGGSLNT CVDSHHHNNS YSSFSSFSFT DLLSNNEESK NPEKGSSSSS FSWGISDTHE  60
IPKFKSFPPA SLPISPSPVS PSTFLNIPPA LSPSVLLDSP VFFSTSNILP LSPTTGAFAG  120
LNNPKEDERK SNDFSFQSRA ASSSSMFQSS LGRNSMEEQM SRQQQPNMGS ADFSTIMKTD  180
VKPELLPQTH SFSQENPAMQ QPAMVHYSQP SQYARAQKSE DGYNWRKYGQ KQVKGSENPR  240
SYYKCTFPNC PTKKKVERNL DGHITEIVYK GNHNHPKPQS TRRSSSSSQS VQINPESFNI  300
DATNQSNMLL GSTQRDSFIT PENSSASFGD EDLEQGSPSR DDDENEPEAK RWKGDNENEA  360
ISSASRTVRE PRIVVQTTSD IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TFLGCPVRKH  420
VERASHDLRA VITTYEGKHN HDVPAARGSG GYSLNKPQQP QPAGNMVSSA APVALRPSTM  480
PNHSLNYQNA IFNPRPQATQ SQQPITLQML QRPAGNLGYS SFGNNYMSTG KEEPKDDFFS  540
SFLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-117	WRKY family protein