PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019187098.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 335aa MW: 36774.8 Da PI: 6.909

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019187098.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.3	1.3e-18	165	219	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_019187098.1 165 RKKLRLSKEQSAYLEESFKEHHTLNPKQKHALAKQLNLRPRQVEVWFQNRRARTK 219 788899***********************************************98 PP
2	HD-ZIP_I/II	127.2	7.1e-41	165	255	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq++ LEesF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk XP_019187098.1 165 RKKLRLSKEQSAYLEESFKEHHTLNPKQKHALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLREENRRLHKELQELR-ALK 255 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence
MELGLSLGLG ITAGNERLGR QEDGGQEPEK SHRSNDSDED DDDVEDYDHA TSSEEEAHRS 60 ADRRLAIFAP PVPLDLLPPA PVQKKNVSFP AAARAAAAEE VSSPNSVASS FRAIDFSIFK 120 RNRNGAVVED GGRDQRTASD AAGNGGAAEP ASRASDEDEN GVNARKKLRL SKEQSAYLEE 180 SFKEHHTLNP KQKHALAKQL NLRPRQVEVW FQNRRARTKL KQTEVDCEYL KRCCETLREE 240 NRRLHKELQE LRALKSSNPF YMHLPATTLT MCPSCEKVAS TSTAPPPATV SAPAPTTPTT 300 APDSIPKPIP FLSKPRFFPF TAAHNPSHPH QSAAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	214	222	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-74	HD-ZIP family protein