PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019187068.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YA
Protein Properties Length: 300aa    MW: 32530.9 Da    PI: 9.3805
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019187068.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA93.62.4e-29151206258
       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      p++VN+KQy++I++RR++Rak+e  + +  ksrkpylh SRh hA+rRpRg+gGrF
  XP_019187068.1 151 GPIFVNPKQYHGIIRRRKSRAKAEMANVV-PKSRKPYLHLSRHLHAMRRPRGCGGRF 206
                     69***********************8877.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MTMHSVISKE NEGIVQNPIA NSPTTLPWWG GLTVQSASCV ETLGHLMALS GDQAIASKQV  60
ERVVEQQIPK GNTGQFAIVP ANVQKFSQVQ GAASAQPDSV EYRGPFEFGF GQPLICAKYP  120
YGEQCYRLYT AYGPQVAGRI MLPLNLASNE GPIFVNPKQY HGIIRRRKSR AKAEMANVVP  180
KSRKPYLHLS RHLHAMRRPR GCGGRFLNTG NNAKGSCKDS SAAEGHTGSQ VSEVLQNPSS  240
SPGSQNYGLE VTSLFSRDDQ DLDPFPTTTT RLLMNAGHSI LTAPGKWMVA AADSCCNLKI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.23e-46NF-YA family protein