PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019187067.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YA
Protein Properties Length: 306aa    MW: 33134.6 Da    PI: 9.2281
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019187067.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA93.52.5e-29157212258
       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      p++VN+KQy++I++RR++Rak+e  + +  ksrkpylh SRh hA+rRpRg+gGrF
  XP_019187067.1 157 GPIFVNPKQYHGIIRRRKSRAKAEMANVV-PKSRKPYLHLSRHLHAMRRPRGCGGRF 212
                     69***********************8877.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MTMHSVISKE NEGIVQNPIA NSPTTLPWWG GLTVQSASCV ETLGHLMALS GDQAIASKQV  60
ERVVEQQIPK GNTGQFAIVP GDCKSLANVQ KFSQVQGAAS AQPDSVEYRG PFEFGFGQPL  120
ICAKYPYGEQ CYRLYTAYGP QVAGRIMLPL NLASNEGPIF VNPKQYHGII RRRKSRAKAE  180
MANVVPKSRK PYLHLSRHLH AMRRPRGCGG RFLNTGNNAK GSCKDSSAAE GHTGSQVSEV  240
LQNPSSSPGS QNYGLEVTSL FSRDDQDLDP FPTTTTRLLM NAGHSILTAP GKWMVAAADS  300
CCNLKI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.29e-49NF-YA family protein