PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019187049.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 520aa MW: 58316.4 Da PI: 6.9054

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019187049.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.2	1.2e-24	194	294	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 +Wt+++v++Li ++ +++++ + +kk++W++vs++m+ergf++sp+qC++k+++lnkryk+++++ +k+ +++++++ + XP_019187049.1 194 KWTDDMVKLLIMVVYYIGDEGVPDGganekkgghgggvlQKKGKWKSVSRAMMERGFSVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQS 288 7************887777754334456677888888******************************************559***** PP trihelix 81 yfdqle 86 ++++++ XP_019187049.1 289 LLESMD 294 *99997 PP

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence
MGSGFNLHTP KPKPPNLKTS YTCLTIPPLN ASLSIPGNPI LENYNPSIHP NTQQNLCHFS 60 STQKNFCIFI ISAPQKDSFF LCKSGGSSSR FDLFMESGGM YSSMGSGMLG LEMSLHHQNP 120 NHIQQQQQSM VAFDHHHHHQ SQPAAKPGVY GYGGKPKAQG LTLSDEDEPA GGPTADQSSA 180 EDGKRKMSPW QRMKWTDDMV KLLIMVVYYI GDEGVPDGGA NEKKGGHGGG VLQKKGKWKS 240 VSRAMMERGF SVSPQQCEDK FNDLNKRYKR VNDILGKGTA CRVVENQSLL ESMDLSPKMK 300 EEVKKLLNSK HLFFREMCAY HNSCSHGGAT AGTAADGSSE PPAPQQNCLH SNESARIESN 360 LAVKAPEEGC ESDQEESDSD EEDDDHGVEE EEEQGSRKRQ KKTGSFSPML QQLSTELTNL 420 CQDGTRSPLE KRHWIRARMM QLEEQQIGFD SQKLELAKQR LKWEKYSSKK EREMEKEKLT 480 NERKRLENDR MVILLQQKEL ELLDHLHHQR TTDPSHSVTG

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence

MGSGFNLHTP KPKPPNLKTS YTCLTIPPLN ASLSIPGNPI LENYNPSIHP NTQQNLCHFS  60
STQKNFCIFI ISAPQKDSFF LCKSGGSSSR FDLFMESGGM YSSMGSGMLG LEMSLHHQNP  120
NHIQQQQQSM VAFDHHHHHQ SQPAAKPGVY GYGGKPKAQG LTLSDEDEPA GGPTADQSSA  180
EDGKRKMSPW QRMKWTDDMV KLLIMVVYYI GDEGVPDGGA NEKKGGHGGG VLQKKGKWKS  240
VSRAMMERGF SVSPQQCEDK FNDLNKRYKR VNDILGKGTA CRVVENQSLL ESMDLSPKMK  300
EEVKKLLNSK HLFFREMCAY HNSCSHGGAT AGTAADGSSE PPAPQQNCLH SNESARIESN  360
LAVKAPEEGC ESDQEESDSD EEDDDHGVEE EEEQGSRKRQ KKTGSFSPML QQLSTELTNL  420
CQDGTRSPLE KRHWIRARMM QLEEQQIGFD SQKLELAKQR LKWEKYSSKK EREMEKEKLT  480
NERKRLENDR MVILLQQKEL ELLDHLHHQR TTDPSHSVTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	9e-93	Trihelix family protein