PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019187047.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 545aa MW: 59256.3 Da PI: 6.9981

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019187047.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.6	1.7e-18	168	254	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L+ea++e+ +l+rg+l++ +Weev++ + r ++ ++s +qCk+k +nl+kryk ++++++++ s s++p+f+q+e XP_019187047.1 168 EWSDTAIACLLEAYTEKFMQLNRGNLRGRDWEEVAAMVsdRCEKQTKSVEQCKNKVDNLKKRYKLERHRMSNG-GISASHWPWFKQME 254 5***********************************88889999*********************99.566679*****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MASCDDDFPL LGDDNATPTA TTPNANPNFH HHHHHQAFSS HRFKASQIHA HPIHCSSPKD 60 ISGEDDVVSP EGEGYSDGGA FCSQPDPKDS NSSSYHVVGM NPYENDSNPY ETEPDPSRSR 120 ASAGNGKRAE QDDISENGTP YSYKKSKLNS SVASSGGGSG EYRKDREEWS DTAIACLLEA 180 YTEKFMQLNR GNLRGRDWEE VAAMVSDRCE KQTKSVEQCK NKVDNLKKRY KLERHRMSNG 240 GISASHWPWF KQMEQIVGNS LLTKAVVEEE KSGNLARPTK RFGTPIAGPG GQINNMKLKS 300 SGGPRWRRVV FKISGAALAG TTQNNIDPKV AMLIAREISI ACRVGVEVAV VVGGRNFFCG 360 DSWVTSTGLD RCTAYQIGMM ATLMNSMLLQ SALEKLGVQT RLQSAFSMPE VAEPYNRQRA 420 IRHLEKGRVV IFGGIGAGTG ISLFTTDTAA ALRASEIHAE AMLKGTNVEG VYVCDSRSNN 480 LAAEHISYRD LASKGAAPID MMAVNCCEEN GIPVVIFNLH DHGNISRALT GEPVGTLIDQ 540 TGRVS

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MASCDDDFPL LGDDNATPTA TTPNANPNFH HHHHHQAFSS HRFKASQIHA HPIHCSSPKD  60
ISGEDDVVSP EGEGYSDGGA FCSQPDPKDS NSSSYHVVGM NPYENDSNPY ETEPDPSRSR  120
ASAGNGKRAE QDDISENGTP YSYKKSKLNS SVASSGGGSG EYRKDREEWS DTAIACLLEA  180
YTEKFMQLNR GNLRGRDWEE VAAMVSDRCE KQTKSVEQCK NKVDNLKKRY KLERHRMSNG  240
GISASHWPWF KQMEQIVGNS LLTKAVVEEE KSGNLARPTK RFGTPIAGPG GQINNMKLKS  300
SGGPRWRRVV FKISGAALAG TTQNNIDPKV AMLIAREISI ACRVGVEVAV VVGGRNFFCG  360
DSWVTSTGLD RCTAYQIGMM ATLMNSMLLQ SALEKLGVQT RLQSAFSMPE VAEPYNRQRA  420
IRHLEKGRVV IFGGIGAGTG ISLFTTDTAA ALRASEIHAE AMLKGTNVEG VYVCDSRSNN  480
LAAEHISYRD LASKGAAPID MMAVNCCEEN GIPVVIFNLH DHGNISRALT GEPVGTLIDQ  540
TGRVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein