PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019186620.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 302aa    MW: 33755.9 Da    PI: 5.9224
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019186620.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.5e-14104155155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr l+P++   + ++ + a+i   A++Y+k+L+
  XP_019186620.1 104 QRMTHIAVERNRRKQMNDYLAVLRGLMPES---YVQRGDQASIIGGAINYVKELE 155
                     79****************************...9******************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MALEAMPLQQ DLFCFNWNYE FEHDENGSFD FPEDYHYPNW DSPISHQFQQ WVLPNSSPSS  60
ELLPSNPEEP AAAAADCGGV TMPAHRQRKR RPRTKKNQEE IENQRMTHIA VERNRRKQMN  120
DYLAVLRGLM PESYVQRGDQ ASIIGGAINY VKELEHELQF LSGTKHEKET HHSSSSSSPF  180
VEFFNIPQYS TAGNLESLSA PNELISSGSG YEVAAGAADI EVTMVENHVN LKLRSKRRPK  240
LLPRIISGIE SLSLTVLHLN VTKAAGFLLC SLALKVEDGC KVASVDEIAA AVNQILGRIH  300
EG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105116RMTHIAVERNRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-63bHLH family protein