PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019186588.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 360aa MW: 39918.5 Da PI: 6.4341

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019186588.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.5	1.9e-15	21	68	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l + + G g+W+ Iar g+ R++k+c++rw +yl XP_019186588.1 21 KGLWSPEEDEKLMSYMLRNGQGCWSDIARNAGLQRCGKSCRLRWINYL 68 678*******************************************97 PP
2	Myb_DNA-binding	52.6	1e-16	74	117	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+el++++++ lG++ W+ Ia++++ gRt++++k++w++ XP_019186588.1 74 RGAFSPQEEELIIHLHNILGNR-WSQIAARLP-GRTDNEIKNFWNS 117 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MRKPDPMGKM GNNNNKAKLR KGLWSPEEDE KLMSYMLRNG QGCWSDIARN AGLQRCGKSC 60 RLRWINYLRP DLKRGAFSPQ EEELIIHLHN ILGNRWSQIA ARLPGRTDNE IKNFWNSTIK 120 KRLKNNANNQ NNSSSLSPNT SDSSSENPRA MIGGATASAL ILPAMHHHHQ PEFMASICMD 180 SSPSSSSNML PHFNPFPPQQ PFEEAAAAGL FGLPPCLAAQ LVGVGGPSAA GECGFLGDYN 240 NVVVEPCYGV MGLENDLSVP PLESISTANN HNNKDSKEEN NNNNNNNVNN NNVDYYGIFE 300 KKANAVNSNN NHLYEEGSIK VEDYMVNHHW SGESLRIGEL DWEGLLANVP SLPYLDFQVQ

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MRKPDPMGKM GNNNNKAKLR KGLWSPEEDE KLMSYMLRNG QGCWSDIARN AGLQRCGKSC  60
RLRWINYLRP DLKRGAFSPQ EEELIIHLHN ILGNRWSQIA ARLPGRTDNE IKNFWNSTIK  120
KRLKNNANNQ NNSSSLSPNT SDSSSENPRA MIGGATASAL ILPAMHHHHQ PEFMASICMD  180
SSPSSSSNML PHFNPFPPQQ PFEEAAAAGL FGLPPCLAAQ LVGVGGPSAA GECGFLGDYN  240
NVVVEPCYGV MGLENDLSVP PLESISTANN HNNKDSKEEN NNNNNNNVNN NNVDYYGIFE  300
KKANAVNSNN NHLYEEGSIK VEDYMVNHHW SGESLRIGEL DWEGLLANVP SLPYLDFQVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08500.1	2e-72	MYB family protein