PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019186546.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 699aa    MW: 76862.2 Da    PI: 5.4597
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019186546.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.7e-1848102256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r+  ++t++q++e+e++F ++++p+ ++r++L ++lgL+  qVk+WFqN+R ++k
  XP_019186546.1  48 RRHYRHTQHQIQEMESFFIECPHPDDTQRKDLGRRLGLEALQVKFWFQNKRSQMK 102
                     445578**********************************************998 PP
2START201.63.3e-632084251206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el+++a+ +ep+Wv s+    + + ++e++++f+++ +      ++ea+r+s+vv m++++lve+l+d++ qW++ +a    +a+tl
  XP_019186546.1 208 ELAVAAMEELIRMAQTGEPLWVPSPdnssKVLCEEEYVRTFPRGIGpkplgLKSEASRESAVVMMNHVNLVEILMDVN-QWSNVFAgivsRAMTL 301
                     57899********************98888889**********999********************************.**************** PP

                     EEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  83 evissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                     ev+s+g       galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+d            R++++pSg+li++++ng+s+vtw+eh
  XP_019186546.1 302 EVLSTGvagnyynGALQVMSAEFQVPSPLVPtRENYFVRYCKQHSDGTWAVVDVSLDTL---------SRCRRRPSGCLIQEMPNGYSRVTWIEH 387
                     *******************************************************9854.........589************************ PP

                     .EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 .vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      v++++r +h+++r+lv+sgla+gak+w atl+rqce+
  XP_019186546.1 388 vVEVDDRAVHSIYRPLVNSGLAFGAKRWIATLDRQCER 425
                     55**********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    
MSSQKNPENE LANMIRDEEY ESKSGNDIME APSGDDQDPN QRPNKKKRRH YRHTQHQIQE  60
MESFFIECPH PDDTQRKDLG RRLGLEALQV KFWFQNKRSQ MKAQNDRSEN TQLRAENEKL  120
RADNIRYRGA LLGNATCPNC GGPAAIGDMS FDEQQLIRIE NVRLREEIER ITQIAATFGH  180
QPGELYSAGD LLRSVSGPME ADKQMIIELA VAAMEELIRM AQTGEPLWVP SPDNSSKVLC  240
EEEYVRTFPR GIGPKPLGLK SEASRESAVV MMNHVNLVEI LMDVNQWSNV FAGIVSRAMT  300
LEVLSTGVAG NYYNGALQVM SAEFQVPSPL VPTRENYFVR YCKQHSDGTW AVVDVSLDTL  360
SRCRRRPSGC LIQEMPNGYS RVTWIEHVVE VDDRAVHSIY RPLVNSGLAF GAKRWIATLD  420
RQCERLASAM AAYNIIPAVD GGVITSPEGR KSILKLAERM VMSFCAGVGA STSQTWTTLS  480
GSGADDVRVM TRKSIDDPGT PPGIVLSAAT SFFLPLPPKT VFDFLRDQNS RREWDILSNG  540
RLVQEIAHIA NGRDPGNNVS LLRVNSANSS QGNMLMILQE SCTDSTGCFV MYAPVDIVAM  600
RVVLSGGDPD YVALLPSGFA ILPDGPPGNG GLSPEIGSGG SLITVAFQVL VDSVPTANLS  660
LSSVATVNSL IMCTMESIKG AVRARFEGGP EGHPPWTQP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14549KKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein