PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019186506.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YA
Protein Properties Length: 278aa    MW: 30989.9 Da    PI: 10.1377
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019186506.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.23.6e-30127183158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RR  Rak+e ekk  +k+r+pylheSRh+hAlrR+RgsgGrF
  XP_019186506.1 127 EEPVYVNAKQYNGILRRRRVRAKAELEKKA-IKARRPYLHESRHQHALRRERGSGGRF 183
                     69***************************9.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MVCLPSGKKQ TGLFPLKQTS HREMPKGVVT KKKKRIQLHN LVLSFGLNES NSQDEQHLKH  60
ASSIPAVMSE QLGANSQMEL VGHSIMLASY PYADPQYGGM FSYCSPVQSH LFGLHHARMP  120
LPLEMEEEPV YVNAKQYNGI LRRRRVRAKA ELEKKAIKAR RPYLHESRHQ HALRRERGSG  180
GRFLNTKKLN DMNSKTDEHT QSGATATTNS GHSSGSEHLC TNSEGQSAVK EMCRADSHGF  240
PSVHFTESSG NEKGSFRHGH QNWSFMGNQA PHGAPPSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.23e-23NF-YA family protein