PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019186500.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YA
Protein Properties Length: 284aa    MW: 31354.4 Da    PI: 7.5472
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019186500.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.23.7e-30133189158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RR  Rak+e ekk  +k+r+pylheSRh+hAlrR+RgsgGrF
  XP_019186500.1 133 EEPVYVNAKQYNGILRRRRVRAKAELEKKA-IKARRPYLHESRHQHALRRERGSGGRF 189
                     69***************************9.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MQPWWRGFGD NGMPTFGQET NGSISFETNE SQGNAEGGGN KEKETNSTAQ SGLNESNSQD  60
EQHLKHASSI PAVMSEQLGA NSQMELVGHS IMLASYPYAD PQYGGMFSYC SPVQSHLFGL  120
HHARMPLPLE MEEEPVYVNA KQYNGILRRR RVRAKAELEK KAIKARRPYL HESRHQHALR  180
RERGSGGRFL NTKKLNDMNS KTDEHTQSGA TATTNSGHSS GSEHLCTNSE GQSAVKEMCR  240
ADSHGFPSVH FTESSGNEKG SFRHGHQNWS FMGNQAPHGA PPSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.12e-23NF-YA family protein