PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019186374.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 359aa MW: 39384.1 Da PI: 9.7637

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019186374.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.7e-17	45	90	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W ++Ed +l+++v+++G ++W+ Ia+ ++ gR++k+c++rw++ XP_019186374.1 45 RGHWKPDEDAKLKELVALHGAHNWNFIAHNLP-GRSGKSCRLRWYNQ 90 899***************************.**********96 PP
2	Myb_DNA-binding	48.2	2.4e-15	97	143	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r +T+eE+e+lv+a k++G++ W+tIar Rt++ +k++w+ +l XP_019186374.1 97 RSTFTAEEEERLVEAQKMYGNK-WATIARLYFPCRTDNAVKNHWHVLL 143 678*****************.**8766*********9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MYINLCRHRR YYHHFPLPEM ITGTNNGNGV PEIDGGGNCS RFIPRGHWKP DEDAKLKELV 60 ALHGAHNWNF IAHNLPGRSG KSCRLRWYNQ LDPKLNRSTF TAEEEERLVE AQKMYGNKWA 120 TIARLYFPCR TDNAVKNHWH VLLARNERWW RQQQIGPVSA ASFTSTCGGY KRMKLTNVIN 180 NPSTSSFNAA AATESTVDSK STCSHLSLSA ASFGRNPMPP DFQTPGAVTG SLSSSGVEEG 240 KDRQCNSPRP ILSTPITDIG LSITGSSSSR TEEGKGRQCY SPLPILTTPF ATKIGLSITT 300 KGSSSSSKVR RGGQSESSNS EVSGASESVA NLKSTNQTTD QSNQLKKIAF YDFLGMGAT

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MYINLCRHRR YYHHFPLPEM ITGTNNGNGV PEIDGGGNCS RFIPRGHWKP DEDAKLKELV  60
ALHGAHNWNF IAHNLPGRSG KSCRLRWYNQ LDPKLNRSTF TAEEEERLVE AQKMYGNKWA  120
TIARLYFPCR TDNAVKNHWH VLLARNERWW RQQQIGPVSA ASFTSTCGGY KRMKLTNVIN  180
NPSTSSFNAA AATESTVDSK STCSHLSLSA ASFGRNPMPP DFQTPGAVTG SLSSSGVEEG  240
KDRQCNSPRP ILSTPITDIG LSITGSSSSR TEEGKGRQCY SPLPILTTPF ATKIGLSITT  300
KGSSSSSKVR RGGQSESSNS EVSGASESVA NLKSTNQTTD QSNQLKKIAF YDFLGMGAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	2e-50	MYB family protein