PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019186285.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 316aa MW: 34293.8 Da PI: 8.8284

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019186285.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.5e-18	165	219	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_019186285.1 165 RKKLRLTKDQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 219 678899***********************************************98 PP
2	HD-ZIP_I/II	127.8	4.5e-41	165	254	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+k+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l XP_019186285.1 165 RKKLRLTKDQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-AL 254 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence
MELALSLGGS NGNPTRKPFA LLESKSSAVG IGGDLGFCME NMNNSGGREE PPPPVQLDLL 60 PLSPVHRRQS GSQLLLPWLP DNLGAEAGVK ALDMNRRPAG AVAEEAEDAA ALSSPNSAAS 120 SFKMDFSIFR NGLLGKRDST GDGDRERGGS SNSRASDDDE NGLGRKKLRL TKDQSAFLEE 180 SFKEHNTLNP KQKLALAKQL NLRPRQVEVW FQNRRARTKL KQTEVDCEYL KRCCETLTEE 240 NRRLQKELQE LRALKASQPF YMQLPATTLT MCPSCERVAS STAAATPTTA AAAHGGAKPK 300 LFPFPPPQVH APQAAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	214	222	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	3e-69	HD-ZIP family protein