PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019186130.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 289aa    MW: 33616 Da    PI: 8.7897
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019186130.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.52e-2448130186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+ qe+++ + +r e++ ++ ++k++k lWe +++km+e+g++rs++qCk+kw+nl +ryk ++++e ++    ++++py+++l+
  XP_019186130.1  48 QWSIQETRDFLIIRAELDPTFMQTKRNKLLWEIIASKMKEKGYNRSAEQCKCKWKNLVTRYKGCETMEPEG---MRQQFPYYNELQ 130
                     7********************************************************************97...56679****997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MEGHHHPPHH HPQLHPQVSH LQYGGGVSVD ASVGGGGGSG GVADRFPQWS IQETRDFLII  60
RAELDPTFMQ TKRNKLLWEI IASKMKEKGY NRSAEQCKCK WKNLVTRYKG CETMEPEGMR  120
QQFPYYNELQ TIFNTRMQRM LWMEAEGGSS TAGGSKKKAG MALSSDEEEE NEESDGEAKS  180
GRKKRKVVKS GGSGNNVVNS LREILEDFMK QQMQMEAQWM KAVEAREEER RIKEMEWRRT  240
MEALENERVM MERRWREREE QRRAREEARA EKRDALITAL LNKLRREDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.12e-51Trihelix family protein