PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019186103.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 555aa MW: 62962.4 Da PI: 7.2503

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019186103.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.9	1.1e-12	128	181	2	59
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnk 59 W+++evlaL+++r++me + + We+vs+k++e gf+rsp++Cke++e+ ++ XP_019186103.1 128 WSNEEVLALLRIRSSMEINWFPD----YSWEHVSRKLAELGFKRSPEKCKERFEEESR 181 **************9776655....79**********************98665 PP

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence
MFDGVPDQFH HFIASSRVSL QIPFPFPLHA TTSPPPPPPP QPPPPPAPTF STFDPYPSHQ 60 TLQPHHQHHQ HQHQHHHLHH HLSPPPPQPK NEASKEDQTT TLLSTSLVLE RERSSASAAA 120 GGEPGGPWSN EEVLALLRIR SSMEINWFPD YSWEHVSRKL AELGFKRSPE KCKERFEEES 180 RNLNSLSFNK SSFRFFSELD ELYQHQGGEG DHHKNYQNEE SVQTRNDNHH QQPPHRRERE 240 SAAAAAAEAQ SLEEGSGNVD HNSTTSRSSK SNNNNGGGDE NKKRMKRKGK RKRELEMFKG 300 FCEGIVERIM AQQEEMHSKI IEDMVKREEE KIARDEAWKS QERERLNKEI ETREKEHEIA 360 SNRQAKIIEF LNKFASSSST PSLHSPLDQS LLDKINDLFH HPKNHPTSPS STHPHNDEKM 420 GTKKAKKVSS FPHQNPTSNN NPTPQSSTNP SFTSPKVPTE TLILPSTTTM DLGDPEENHP 480 TPQSKDTQNG GGDIGKRWPR EEVLALINLR CNSLNNNKKR SVDSRTCPYF HQLSSLYCSQ 540 GKLRGDSPEN RSSAD

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence

MFDGVPDQFH HFIASSRVSL QIPFPFPLHA TTSPPPPPPP QPPPPPAPTF STFDPYPSHQ  60
TLQPHHQHHQ HQHQHHHLHH HLSPPPPQPK NEASKEDQTT TLLSTSLVLE RERSSASAAA  120
GGEPGGPWSN EEVLALLRIR SSMEINWFPD YSWEHVSRKL AELGFKRSPE KCKERFEEES  180
RNLNSLSFNK SSFRFFSELD ELYQHQGGEG DHHKNYQNEE SVQTRNDNHH QQPPHRRERE  240
SAAAAAAEAQ SLEEGSGNVD HNSTTSRSSK SNNNNGGGDE NKKRMKRKGK RKRELEMFKG  300
FCEGIVERIM AQQEEMHSKI IEDMVKREEE KIARDEAWKS QERERLNKEI ETREKEHEIA  360
SNRQAKIIEF LNKFASSSST PSLHSPLDQS LLDKINDLFH HPKNHPTSPS STHPHNDEKM  420
GTKKAKKVSS FPHQNPTSNN NPTPQSSTNP SFTSPKVPTE TLILPSTTTM DLGDPEENHP  480
TPQSKDTQNG GGDIGKRWPR EEVLALINLR CNSLNNNKKR SVDSRTCPYF HQLSSLYCSQ  540
GKLRGDSPEN RSSAD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	283	291	KRMKRKGKR
2	287	294	RKGKRKRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	8e-33	Trihelix family protein