PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019185984.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 564aa MW: 65003.4 Da PI: 8.7788

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019185984.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.5	5.2e-19	11	111	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fY +YA +vGF++r s+ + r+++ t++ C++eg++++ +++ ++ +r+r+++rtgC+a+++ k + ++vt++ + XP_019185984.1 11 EFYTRYAAKVGFDTRFSSVVTA-RDRTKTQKLILCNREGFKNTGSQHcqsqsnadagegPSRPKRRRVSNRTGCRARIMFKYIGAAGYQVTTFIE 104 6**************99888.666699999******9999999999999889999************************** PP FAR1 84 eHnHela 90 +HnH+++ XP_019185984.1 105 KHNHNMS 111 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence
MIFKTLDAGI EFYTRYAAKV GFDTRFSSVV TARDRTKTQK LILCNREGFK NTGSQHCQSQ 60 SNADAGEGPS RPKRRRVSNR TGCRARIMFK YIGAAGYQVT TFIEKHNHNM SSVLARQFLK 120 GNRNISSVHQ KFILDCAKAN IGASKSHGLY SHIVGDYSEV GATVVDFKNV RRDLRAYILG 180 ADAQILVDED EQMSRLFWAD PMSKKNFAAF GDVVSFDATY STNRYDLAMG MEPRIIVTDQ 240 DPAMKVAIPT VFKQARHRYC MWHIMCKVGE KVGPTLNKDE EFRNKLNSIV WTSSLEPPDF 300 EKQWRELMEK YNLVEHNWFK TMFEARKHWI PAYFRDVFMG GLLRTTSRSE SENYTYNRFT 360 GPQSSLVEFM MNFDSALRSQ RNTNAKLNSD NEGYNPDMKT PLGIEKHASI VYTITVFYQV 420 QEEICASCFK CMVLSVREDG GMWHYDIMEG KNKRFTVVPN VNDHEAKCSC KMFEMVGLLC 480 RHIFVVFRDL ERIPLKYVVN RWTKDASLKA TFEIDGVIYD QNGPKDEKKM LLNKVWFDIH 540 CCMDLAGSNM EQLTAFSQVI DEQK

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence

MIFKTLDAGI EFYTRYAAKV GFDTRFSSVV TARDRTKTQK LILCNREGFK NTGSQHCQSQ  60
SNADAGEGPS RPKRRRVSNR TGCRARIMFK YIGAAGYQVT TFIEKHNHNM SSVLARQFLK  120
GNRNISSVHQ KFILDCAKAN IGASKSHGLY SHIVGDYSEV GATVVDFKNV RRDLRAYILG  180
ADAQILVDED EQMSRLFWAD PMSKKNFAAF GDVVSFDATY STNRYDLAMG MEPRIIVTDQ  240
DPAMKVAIPT VFKQARHRYC MWHIMCKVGE KVGPTLNKDE EFRNKLNSIV WTSSLEPPDF  300
EKQWRELMEK YNLVEHNWFK TMFEARKHWI PAYFRDVFMG GLLRTTSRSE SENYTYNRFT  360
GPQSSLVEFM MNFDSALRSQ RNTNAKLNSD NEGYNPDMKT PLGIEKHASI VYTITVFYQV  420
QEEICASCFK CMVLSVREDG GMWHYDIMEG KNKRFTVVPN VNDHEAKCSC KMFEMVGLLC  480
RHIFVVFRDL ERIPLKYVVN RWTKDASLKA TFEIDGVIYD QNGPKDEKKM LLNKVWFDIH  540
CCMDLAGSNM EQLTAFSQVI DEQK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	77	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-79	FAR1 family protein