PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019185970.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 746aa    MW: 85309.6 Da    PI: 9.1544
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019185970.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.55.2e-1964164190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 
                     +fY++YA++vGF++r s+  +  r+g+ ++++ vC++eg++++  ++             ++ +r+r+++rtgC+a+ + k    + ++vt++ +
  XP_019185970.1  64 EFYKHYASKVGFDTRSSSVVTA-RDGTKIQKQIVCNREGFKNTGAQHchsqssadagdgPSRPKRRRVSNRTGCRARNMFKYIGAAGYQVTTFIE 157
                     6**************9998887.88889***************999999********99899999****************************** PP

            FAR1  84 eHnHela 90 
                     +HnH+++
  XP_019185970.1 158 KHNHNMS 164
                     ****986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    
MEEFDRVPID IQSTNNPSLS PSSSSNGHTL TISPGMTQYW TPHCEDEIRP AVDMIFKTLD  60
AGIEFYKHYA SKVGFDTRSS SVVTARDGTK IQKQIVCNRE GFKNTGAQHC HSQSSADAGD  120
GPSRPKRRRV SNRTGCRARN MFKYIGAAGY QVTTFIEKHN HNMSSVLARQ FLKGNRNISS  180
VHQKFILDCA KANIGAPKSH GLYSQIVGDY SEVGATVVDF KNVRRDLRAY ILGADAQILM  240
SRLFWANPMS KKNFAAFGDV VSFDATYSTN RYDLVFTPFT GVDNHKKCIT FGAGLLLKED  300
IEFYVWLFEK FKKAMGMEPR IIVTDQDPAM KVAIPTVFKQ ARHRYCMWHI MCKVWEKVGP  360
TLNKDEEFRN KLNSIVWTSS LEPPDFEKQW RELMEKYNLV EYNWFKTMFE ARKHWIPAYF  420
RDGFMGGLLR ITSRSESENY TYNRFTGPQS SLVEFMMNFD SALKSQHNTN AKLNSDNEGY  480
NPDMKTPLGI EKHASIVYTI TVFYQVQEEI CASCFKCMVL SVREDGGLLH YDIMDGKNKR  540
FTVVHNVNDH EAKCSCKMFE MVGLLCRHIF VVFRDLERIP LKYVVNRWTK DASLKATFEI  600
DGVIYNQNGP KDEKKMLLNK VWSDIHCCMD LAGSNMEQLP AFSQVINEQK QLLLSGKDKL  660
SPQHSRRTVI ESYCGSTEIS EINILPPKHA KNKGIDKRIK SSKELAMEKE EGKRCNFCGV  720
RGDHHDTRTC PLNPKSKDKQ KGKKNA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126130KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-96FAR1 family protein